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This page was generated on 2025-09-15 12:03 -0400 (Mon, 15 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4719
lconwaymacOS 12.7.1 Montereyx86_644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4538
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4522
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4543
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1627/2327HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PRONE 1.3.1  (landing page)
Lis Arend
Snapshot Date: 2025-09-14 13:45 -0400 (Sun, 14 Sep 2025)
git_url: https://git.bioconductor.org/packages/PRONE
git_branch: devel
git_last_commit: 6288796
git_last_commit_date: 2025-05-26 09:22:53 -0400 (Mon, 26 May 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for PRONE on nebbiolo2

To the developers/maintainers of the PRONE package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PRONE.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: PRONE
Version: 1.3.1
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 PRONE
StartedAt: 2025-09-14 19:18:33 -0400 (Sun, 14 Sep 2025)
EndedAt: 2025-09-14 19:20:25 -0400 (Sun, 14 Sep 2025)
EllapsedTime: 112.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 PRONE
###
##############################################################################
##############################################################################


* checking for file ‘PRONE/DESCRIPTION’ ... OK
* preparing ‘PRONE’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Differential_Expression.Rmd’ using rmarkdown

Quitting from Differential_Expression.Rmd:209-217 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Differential_Expression.Rmd' failed with diagnostics:
The `axis.title.x` theme element must be a <element_text> object.
--- failed re-building ‘Differential_Expression.Rmd’

--- re-building ‘Imputation.Rmd’ using rmarkdown
--- finished re-building ‘Imputation.Rmd’

--- re-building ‘Normalization.Rmd’ using rmarkdown
--- finished re-building ‘Normalization.Rmd’

--- re-building ‘PRONE.Rmd’ using rmarkdown
--- finished re-building ‘PRONE.Rmd’

--- re-building ‘Preprocessing.Rmd’ using rmarkdown
--- finished re-building ‘Preprocessing.Rmd’

--- re-building ‘Spike_In_Data.Rmd’ using rmarkdown
--- finished re-building ‘Spike_In_Data.Rmd’

SUMMARY: processing the following file failed:
  ‘Differential_Expression.Rmd’

Error: Vignette re-building failed.
Execution halted