Multiple platform build/check report for BioC 3.21 - BUILD results for POMA on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"	4749
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"	4461
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4411
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4366
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"	4276
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for POMA on kunpeng2

To the developers/maintainers of the POMA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/POMA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: POMA

Version: 1.17.6

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data POMA

StartedAt: 2024-12-09 20:57:51 -0000 (Mon, 09 Dec 2024)

EndedAt: 2024-12-09 20:57:57 -0000 (Mon, 09 Dec 2024)

EllapsedTime: 6.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data POMA
###
##############################################################################
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* checking for file ‘POMA/DESCRIPTION’ ... OK
* preparing ‘POMA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘POMA-normalization.Rmd’ using rmarkdown
Error: processing vignette 'POMA-normalization.Rmd' failed with diagnostics:
unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/fastmap/libs/fastmap.so':
  /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/fastmap/libs/fastmap.so)
--- failed re-building ‘POMA-normalization.Rmd’

--- re-building ‘POMA-workflow.Rmd’ using rmarkdown
Error: processing vignette 'POMA-workflow.Rmd' failed with diagnostics:
unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/fastmap/libs/fastmap.so':
  /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/fastmap/libs/fastmap.so)
--- failed re-building ‘POMA-workflow.Rmd’

SUMMARY: processing the following files failed:
  ‘POMA-normalization.Rmd’ ‘POMA-workflow.Rmd’

Error: Vignette re-building failed.
Execution halted