| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-01-25 15:37 -0500 (Sat, 25 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4658 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4455 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4408 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1549/2286 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| PICS 2.51.0 (landing page) Renan Sauteraud
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | ERROR | skipped | ||||||||||
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To the developers/maintainers of the PICS package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PICS.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: PICS |
| Version: 2.51.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL PICS |
| StartedAt: 2025-01-24 15:23:18 -0500 (Fri, 24 Jan 2025) |
| EndedAt: 2025-01-24 15:23:22 -0500 (Fri, 24 Jan 2025) |
| EllapsedTime: 3.8 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL PICS
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* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘PICS’ ...
** this is package ‘PICS’ version ‘2.51.0’
** using staged installation
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pics.c -o pics.o
gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c segment.c -o segment.o
segment.c: In function ‘segReads’:
segment.c:147:22: warning: implicit declaration of function ‘Calloc’; did you mean ‘calloc’? [-Wimplicit-function-declaration]
147 | scoreRegionF=(int*)Calloc((M-m)/(2*INTEGER_VALUE(width)), int);
| ^~~~~~
| calloc
segment.c:147:61: error: expected expression before ‘int’
147 | scoreRegionF=(int*)Calloc((M-m)/(2*INTEGER_VALUE(width)), int);
| ^~~
segment.c:148:61: error: expected expression before ‘int’
148 | scoreRegionR=(int*)Calloc((M-m)/(2*INTEGER_VALUE(width)), int);
| ^~~
make: *** [/home/biocbuild/bbs-3.21-bioc/R/etc/Makeconf:195: segment.o] Error 1
ERROR: compilation failed for package ‘PICS’
* removing ‘/home/biocbuild/bbs-3.21-bioc/R/site-library/PICS’