Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2024-12-24 11:47 -0500 (Tue, 24 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4373 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1472/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
OSAT 1.55.0 (landing page) Li Yan
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the OSAT package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OSAT.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: OSAT |
Version: 1.55.0 |
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:OSAT.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings OSAT_1.55.0.tar.gz |
StartedAt: 2024-12-24 09:34:33 -0000 (Tue, 24 Dec 2024) |
EndedAt: 2024-12-24 09:35:02 -0000 (Tue, 24 Dec 2024) |
EllapsedTime: 29.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: OSAT.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD check --install=check:OSAT.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings OSAT_1.55.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/OSAT.Rcheck’ * using R Under development (unstable) (2024-11-24 r87369) * using platform: aarch64-unknown-linux-gnu * R was compiled by aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: openEuler 24.03 (LTS) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘OSAT/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘OSAT’ version ‘1.55.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘OSAT’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE assign.sample.to.container: no visible global function definition for ‘head’ barplot.gExperimentSetup: no visible global function definition for ‘layout’ barplot.gExperimentSetup: no visible global function definition for ‘barplot’ barplot.gExperimentSetup: no visible global function definition for ‘gray’ barplot.gExperimentSetup: no visible global function definition for ‘points’ barplot.gExperimentSetup: no visible global function definition for ‘mtext’ multi.barplot: no visible global function definition for ‘layout’ multi.barplot: no visible global function definition for ‘barplot’ multi.barplot: no visible global function definition for ‘gray’ multi.barplot: no visible global function definition for ‘mtext’ show,gAssembly: no visible global function definition for ‘head’ show,gAssembly: no visible global function definition for ‘tail’ show,gContainer: no visible global function definition for ‘head’ show,gContainer: no visible global function definition for ‘tail’ show,gExperimentSetup: no visible global function definition for ‘head’ show,gExperimentSetup: no visible global function definition for ‘tail’ show,gPlate: no visible global function definition for ‘head’ show,gPlate: no visible global function definition for ‘tail’ show,gSample: no visible global function definition for ‘head’ show,gSample: no visible global function definition for ‘tail’ Undefined global functions or variables: barplot gray head layout mtext points tail Consider adding importFrom("grDevices", "gray") importFrom("graphics", "barplot", "layout", "mtext", "points") importFrom("utils", "head", "tail") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.21-bioc/meat/OSAT.Rcheck/00check.log’ for details.
OSAT.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL OSAT ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’ * installing *source* package ‘OSAT’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OSAT)
OSAT.Rcheck/OSAT-Ex.timings
name | user | system | elapsed | |
BeadChip-class | 0.01 | 0.00 | 0.01 | |
BeadPlate-class | 0.007 | 0.000 | 0.008 | |
MSAroboticPlate-class | 0.285 | 0.000 | 0.286 | |
QC | 1.325 | 0.004 | 1.332 | |
create.optimized.setup | 1.125 | 0.000 | 1.128 | |
example.setup | 0.039 | 0.000 | 0.039 | |
gContainer-class | 0.02 | 0.00 | 0.02 | |
gExperimentSetup-class | 0.045 | 0.004 | 0.049 | |
gSample-class | 0.015 | 0.000 | 0.016 | |
gSlide-class | 0.029 | 0.000 | 0.029 | |
get.experiment.setup | 1.136 | 0.000 | 1.140 | |
multi.barplot | 0.018 | 0.000 | 0.018 | |
multi.chisq.test | 0.015 | 0.000 | 0.015 | |
optimal.block | 1.548 | 0.000 | 1.552 | |
optimal.shuffle | 1.152 | 0.000 | 1.155 | |