| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-08-15 12:07 -0400 (Fri, 15 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4554 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4595 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4537 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4535 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1383/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MultiAssayExperiment 1.35.8 (landing page) Marcel Ramos
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the MultiAssayExperiment package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MultiAssayExperiment.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MultiAssayExperiment |
| Version: 1.35.8 |
| Command: chmod a+r MultiAssayExperiment -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MultiAssayExperiment |
| StartedAt: 2025-08-14 21:47:36 -0400 (Thu, 14 Aug 2025) |
| EndedAt: 2025-08-14 21:49:03 -0400 (Thu, 14 Aug 2025) |
| EllapsedTime: 86.7 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### chmod a+r MultiAssayExperiment -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MultiAssayExperiment
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* checking for file 'MultiAssayExperiment/DESCRIPTION' ... OK
* preparing 'MultiAssayExperiment':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'MultiAssayExperiment.Rmd' using rmarkdown
Quitting from MultiAssayExperiment.Rmd:979-981 [longForm_colDataCols_example]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.matchAddColData()`:
! argument "check.names" is missing, with no default
---
Backtrace:
▆
1. ├─BiocGenerics::longForm(myMultiAssay[, , 1:2], colDataCols = "age")
2. └─MultiAssayExperiment::longForm(myMultiAssay[, , 1:2], colDataCols = "age")
3. └─MultiAssayExperiment (local) .local(object, ...)
4. └─MultiAssayExperiment:::.matchAddColData(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'MultiAssayExperiment.Rmd' failed with diagnostics:
argument "check.names" is missing, with no default
--- failed re-building 'MultiAssayExperiment.Rmd'
--- re-building 'MultiAssayExperiment_cheatsheet.Rmd' using rmarkdown
--- finished re-building 'MultiAssayExperiment_cheatsheet.Rmd'
--- re-building 'QuickStartMultiAssay.Rmd' using rmarkdown
Quitting from QuickStartMultiAssay.Rmd:288-293 [longform_example]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.matchAddColData()`:
! argument "check.names" is missing, with no default
---
Backtrace:
▆
1. ├─BiocGenerics::longForm(...)
2. └─MultiAssayExperiment::longForm(...)
3. └─MultiAssayExperiment (local) .local(object, ...)
4. └─MultiAssayExperiment:::.matchAddColData(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'QuickStartMultiAssay.Rmd' failed with diagnostics:
argument "check.names" is missing, with no default
--- failed re-building 'QuickStartMultiAssay.Rmd'
--- re-building 'UsingHDF5Array.Rmd' using rmarkdown
--- finished re-building 'UsingHDF5Array.Rmd'
SUMMARY: processing the following files failed:
'MultiAssayExperiment.Rmd' 'QuickStartMultiAssay.Rmd'
Error: Vignette re-building failed.
Execution halted