Multiple platform build/check report for BioC 3.21 - BUILD results for MetaboAnnotation on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"	4754
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"	4472
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4426
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4381
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"	4373
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for MetaboAnnotation on kunpeng2

To the developers/maintainers of the MetaboAnnotation package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MetaboAnnotation.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: MetaboAnnotation

Version: 1.11.1

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MetaboAnnotation

StartedAt: 2024-12-24 00:15:36 -0000 (Tue, 24 Dec 2024)

EndedAt: 2024-12-24 00:17:36 -0000 (Tue, 24 Dec 2024)

EllapsedTime: 120.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MetaboAnnotation
###
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* checking for file ‘MetaboAnnotation/DESCRIPTION’ ... OK
* preparing ‘MetaboAnnotation’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MetaboAnnotation.Rmd’ using rmarkdown
Warning: program compiled against libxml 212 using older 211

Quitting from lines 652-654 [unnamed-chunk-38] (MetaboAnnotation.Rmd)
Error: processing vignette 'MetaboAnnotation.Rmd' failed with diagnostics:
invalid class "CompDb" object: Required tables 'ms_compound' not found in the database
--- failed re-building ‘MetaboAnnotation.Rmd’

SUMMARY: processing the following file failed:
  ‘MetaboAnnotation.Rmd’

Error: Vignette re-building failed.
Execution halted