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This page was generated on 2024-12-12 11:47 -0500 (Thu, 12 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4752
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4464
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4415
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4370
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4279
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1283/2273HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MLSeq 2.25.0  (landing page)
Gokmen Zararsiz
Snapshot Date: 2024-12-11 13:40 -0500 (Wed, 11 Dec 2024)
git_url: https://git.bioconductor.org/packages/MLSeq
git_branch: devel
git_last_commit: 97e5509
git_last_commit_date: 2024-10-29 09:50:40 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'DESeq2' which is only available as a source package that needs compilation
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'DESeq2' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'DESeq2' which is only available as a source package that needs compilation
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  ERROR    ERROR  skipped

BUILD results for MLSeq on kunpeng2

To the developers/maintainers of the MLSeq package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MLSeq.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: MLSeq
Version: 2.25.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MLSeq
StartedAt: 2024-12-11 20:46:14 -0000 (Wed, 11 Dec 2024)
EndedAt: 2024-12-11 20:46:16 -0000 (Wed, 11 Dec 2024)
EllapsedTime: 2.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MLSeq
###
##############################################################################
##############################################################################


* checking for file ‘MLSeq/DESCRIPTION’ ... OK
* preparing ‘MLSeq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘MLSeq’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error: package or namespace load failed for ‘caret’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/libs/Rcpp.so':
  /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.32' not found (required by /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/libs/Rcpp.so)
Execution halted
ERROR: lazy loading failed for package ‘MLSeq’
* removing ‘/home/biocbuild/tmp/RtmpDzQnWL/Rinst1c6aa52e41b972/MLSeq’
      -----------------------------------
ERROR: package installation failed