Mattia Pelizzola
| Snapshot Date: 2025-10-22 13:45 -0400 (Wed, 22 Oct 2025) |
| git_url: https://git.bioconductor.org/packages/MEDME |
| git_branch: devel |
| git_last_commit: 8234ba6 |
| git_last_commit_date: 2025-04-15 09:43:00 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-10-23 12:07 -0400 (Thu, 23 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4894 |
| lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4684 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4629 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4642 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1222/2355 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MEDME 1.69.0 (landing page) Mattia Pelizzola
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | NA | ||||||||||
|
To the developers/maintainers of the MEDME package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MEDME.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: MEDME |
| Version: 1.69.0 |
| Command: /home/biocbuild/R/R/bin/R CMD INSTALL MEDME |
| StartedAt: 2025-10-20 20:46:58 -0000 (Mon, 20 Oct 2025) |
| EndedAt: 2025-10-20 20:47:18 -0000 (Mon, 20 Oct 2025) |
| EllapsedTime: 19.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD INSTALL MEDME
###
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* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’
* installing *source* package ‘MEDME’ ...
** this is package ‘MEDME’ version ‘1.69.0’
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c MEDMEweight.c -o MEDMEweight.o
MEDMEweight.c: In function ‘MEDMEweight’:
MEDMEweight.c:90:33: warning: ‘B’ may be used uninitialized [-Wmaybe-uninitialized]
90 | AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
| ^~~~~~~~
MEDMEweight.c:36:10: note: ‘B’ was declared here
36 | double B,C,D,E, Min, Max, Mlim;
| ^
MEDMEweight.c:90:63: warning: ‘C’ may be used uninitialized [-Wmaybe-uninitialized]
90 | AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
| ~~~~~~^~~~
MEDMEweight.c:36:12: note: ‘C’ was declared here
36 | double B,C,D,E, Min, Max, Mlim;
| ^
MEDMEweight.c:90:47: warning: ‘D’ may be used uninitialized [-Wmaybe-uninitialized]
90 | AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
| ~~~^~~~~~~
MEDMEweight.c:36:14: note: ‘D’ was declared here
36 | double B,C,D,E, Min, Max, Mlim;
| ^
MEDMEweight.c:90:33: warning: ‘E’ may be used uninitialized [-Wmaybe-uninitialized]
90 | AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
| ^~~~~~~~
MEDMEweight.c:36:16: note: ‘E’ was declared here
36 | double B,C,D,E, Min, Max, Mlim;
| ^
MEDMEweight.c:92:9: warning: ‘Min’ may be used uninitialized [-Wmaybe-uninitialized]
92 | if(AMSfinal[i] < Min) {AMSfinal[i] = Min;}
| ^
MEDMEweight.c:36:19: note: ‘Min’ was declared here
36 | double B,C,D,E, Min, Max, Mlim;
| ^~~
MEDMEweight.c:36:24: warning: ‘Max’ may be used uninitialized [-Wmaybe-uninitialized]
36 | double B,C,D,E, Min, Max, Mlim;
| ^~~
MEDMEweight.c:77:18: warning: ‘weight’ may be used uninitialized [-Wmaybe-uninitialized]
77 | MeDIPsum = MeDIPsum + MeDIP[j] * weight;
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MEDMEweight.c:30:10: note: ‘weight’ was declared here
30 | double weight, relPos;
| ^~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -shared -L/home/biocbuild/R/R-4.5.0/lib -L/usr/local/lib -o MEDME.so MEDMEweight.o -L/home/biocbuild/R/R-4.5.0/lib -lR
installing to /home/biocbuild/R/R-4.5.0/site-library/00LOCK-MEDME/00new/MEDME/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MEDME)