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This page was generated on 2025-01-24 11:41 -0500 (Fri, 24 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 4609
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" 4393
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 3839
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 3835
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4408
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1159/2286HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MAST 1.33.0  (landing page)
Andrew McDavid
Snapshot Date: 2025-01-23 13:40 -0500 (Thu, 23 Jan 2025)
git_url: https://git.bioconductor.org/packages/MAST
git_branch: devel
git_last_commit: 35654e5
git_last_commit_date: 2024-10-29 10:14:50 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    WARNINGS  

BUILD results for MAST on lconway

To the developers/maintainers of the MAST package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MAST.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MAST
Version: 1.33.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MAST
StartedAt: 2025-01-23 16:39:38 -0500 (Thu, 23 Jan 2025)
EndedAt: 2025-01-23 16:42:58 -0500 (Thu, 23 Jan 2025)
EllapsedTime: 199.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MAST
###
##############################################################################
##############################################################################


* checking for file ‘MAST/DESCRIPTION’ ... OK
* preparing ‘MAST’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MAITAnalysis.Rmd’ using rmarkdown
Warning: code chunks must not depend on the uncached chunk "data"
2025-01-23 16:40:46.734 R[87301:980798749] XType: com.apple.fonts is not accessible.
2025-01-23 16:40:46.735 R[87301:980798749] XType: XTFontStaticRegistry is enabled.
Warning: code chunks must not depend on the uncached chunk "zlm"
Warning: code chunks must not depend on the uncached chunk "boots"
--- finished re-building ‘MAITAnalysis.Rmd’

--- re-building ‘MAST-Intro.Rmd’ using rmarkdown
--- finished re-building ‘MAST-Intro.Rmd’

--- re-building ‘MAST-interoperability.Rmd’ using rmarkdown

Quitting from lines 73-76 [scaterQC] (MAST-interoperability.Rmd)
Error: processing vignette 'MAST-interoperability.Rmd' failed with diagnostics:
there is no package called 'scater'
--- failed re-building ‘MAST-interoperability.Rmd’

SUMMARY: processing the following file failed:
  ‘MAST-interoperability.Rmd’

Error: Vignette re-building failed.
Execution halted