Multiple platform build/check report for BioC 3.21 - BUILD results for MAGeCKFlute on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"	4748
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"	4459
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4349
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for MAGeCKFlute on lconway

To the developers/maintainers of the MAGeCKFlute package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MAGeCKFlute.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: MAGeCKFlute

Version: 2.11.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MAGeCKFlute

StartedAt: 2024-11-24 17:26:42 -0500 (Sun, 24 Nov 2024)

EndedAt: 2024-11-24 17:30:28 -0500 (Sun, 24 Nov 2024)

EllapsedTime: 226.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MAGeCKFlute
###
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* checking for file ‘MAGeCKFlute/DESCRIPTION’ ... OK
* preparing ‘MAGeCKFlute’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MAGeCKFlute.Rmd’ using rmarkdown
2024-11-24 17:27:49.222 R[62025:478757318] XType: com.apple.fonts is not accessible.
2024-11-24 17:27:49.223 R[62025:478757318] XType: XTFontStaticRegistry is enabled.
Warning: ggrepel: 5 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 8 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 3 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 5 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 9 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps
--- finished re-building ‘MAGeCKFlute.Rmd’

--- re-building ‘MAGeCKFlute_enrichment.Rmd’ using rmarkdown

Quitting from lines 104-110 [enrichplot] (MAGeCKFlute_enrichment.Rmd)
Error: processing vignette 'MAGeCKFlute_enrichment.Rmd' failed with diagnostics:
'list' object cannot be coerced to type 'integer'
--- failed re-building ‘MAGeCKFlute_enrichment.Rmd’

SUMMARY: processing the following file failed:
  ‘MAGeCKFlute_enrichment.Rmd’

Error: Vignette re-building failed.
Execution halted