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This page was generated on 2024-12-24 11:43 -0500 (Tue, 24 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4754
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4472
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4426
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4381
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4373
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1088/2274HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LEA 3.19.1  (landing page)
Olivier Francois
Snapshot Date: 2024-12-23 13:40 -0500 (Mon, 23 Dec 2024)
git_url: https://git.bioconductor.org/packages/LEA
git_branch: devel
git_last_commit: a37ac6c
git_last_commit_date: 2024-11-08 12:52:47 -0500 (Fri, 08 Nov 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  ERROR    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  ERROR    ERROR  skipped

BUILD results for LEA on lconway

To the developers/maintainers of the LEA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/LEA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: LEA
Version: 3.19.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data LEA
StartedAt: 2024-12-23 17:09:03 -0500 (Mon, 23 Dec 2024)
EndedAt: 2024-12-23 17:09:07 -0500 (Mon, 23 Dec 2024)
EllapsedTime: 4.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data LEA
###
##############################################################################
##############################################################################


* checking for file ‘LEA/DESCRIPTION’ ... OK
* preparing ‘LEA’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘LEA’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_LFMM.c -o R_LFMM.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_crossEntropy.c -o R_crossEntropy.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_createDataSet.c -o R_createDataSet.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_sNMF.c -o R_sNMF.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_ancestrymap2geno.c -o R_ancestrymap2geno.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_ancestrymap2lfmm.c -o R_ancestrymap2lfmm.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_geno2lfmm.c -o R_geno2lfmm.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_lfmm2geno.c -o R_lfmm2geno.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_pca.c -o R_pca.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_ped2geno.c -o R_ped2geno.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_ped2lfmm.c -o R_ped2lfmm.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_vcf2geno.c -o R_vcf2geno.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_tracyWidom.c -o R_tracyWidom.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_init_LEA.c -o R_init_LEA.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c bituint/bituint.c -o bituint/bituint.o
bituint/bituint.c:30:28: error: implicit declaration of function 'Calloc' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
        *dat = (bituint *) Calloc(N * (*Mp) * sizeof(bituint), bituint);
                           ^
bituint/bituint.c:30:64: error: unexpected type name 'bituint': expected expression
        *dat = (bituint *) Calloc(N * (*Mp) * sizeof(bituint), bituint);
                                                               ^
2 errors generated.
make: *** [bituint/bituint.o] Error 1
ERROR: compilation failed for package ‘LEA’
* removing ‘/private/tmp/RtmpUu3ig5/Rinstd862287949f0/LEA’
      -----------------------------------
ERROR: package installation failed