##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Ibex
###
##############################################################################
##############################################################################
* checking for file ‘Ibex/DESCRIPTION’ ... OK
* preparing ‘Ibex’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Ibex.Rmd’ using knitr
Requirement already satisfied: pip in /Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.21.5/Ibex/0.99.31/IbexEnv/lib/python3.9/site-packages (23.0.1)
Collecting pip
Using cached pip-25.2-py3-none-any.whl (1.8 MB)
Collecting wheel
Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
Requirement already satisfied: setuptools in /Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.21.5/Ibex/0.99.31/IbexEnv/lib/python3.9/site-packages (79.0.1)
Collecting setuptools
Using cached setuptools-80.9.0-py3-none-any.whl (1.2 MB)
Installing collected packages: wheel, setuptools, pip
Attempting uninstall: setuptools
Found existing installation: setuptools 79.0.1
Uninstalling setuptools-79.0.1:
Successfully uninstalled setuptools-79.0.1
Attempting uninstall: pip
Found existing installation: pip 23.0.1
Uninstalling pip-23.0.1:
Successfully uninstalled pip-23.0.1
Successfully installed pip-25.2 setuptools-80.9.0 wheel-0.45.1
Collecting keras==3.6.*
Using cached keras-3.6.0-py3-none-any.whl.metadata (5.8 kB)
ERROR: Ignored the following versions that require a different python version: 3.11.0 Requires-Python >=3.10; 3.11.1 Requires-Python >=3.10; 3.11.2 Requires-Python >=3.10; 3.11.3 Requires-Python >=3.10
ERROR: Could not find a version that satisfies the requirement tensorflow==2.18.* (from versions: 2.5.0, 2.5.1, 2.5.2, 2.5.3, 2.6.0rc0, 2.6.0rc1, 2.6.0rc2, 2.6.0, 2.6.1, 2.6.2, 2.6.3, 2.6.4, 2.6.5, 2.7.0rc0, 2.7.0rc1, 2.7.0, 2.7.1, 2.7.2, 2.7.3, 2.7.4, 2.8.0rc0, 2.8.0rc1, 2.8.0, 2.8.1, 2.8.2, 2.8.3, 2.8.4, 2.9.0rc0, 2.9.0rc1, 2.9.0rc2, 2.9.0, 2.9.1, 2.9.2, 2.9.3, 2.10.0rc0, 2.10.0rc1, 2.10.0rc2, 2.10.0rc3, 2.10.0, 2.10.1, 2.11.0rc0, 2.11.0rc1, 2.11.0rc2, 2.11.0, 2.11.1, 2.12.0rc0, 2.12.0rc1, 2.12.0, 2.12.1, 2.13.0rc0, 2.13.0rc1, 2.13.0rc2, 2.13.0, 2.13.1, 2.14.0rc0, 2.14.0rc1, 2.14.0, 2.14.1, 2.15.0rc0, 2.15.0rc1, 2.15.0, 2.15.1, 2.16.0rc0, 2.16.1, 2.16.2)
ERROR: No matching distribution found for tensorflow==2.18.*
Quitting from Ibex.Rmd:207-229 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Error installing package(s): "'keras==3.6.*'", "'tensorflow==2.18.*'", "'h5py==3.13'", "'numpy==1.26'"
---
Backtrace:
▆
1. └─Ibex::Ibex_matrix(...)
2. └─basilisk::basiliskRun(...)
3. └─basilisk::basiliskStart(...)
4. └─basilisk::obtainEnvironmentPath(env)
5. └─basilisk::setupBasiliskEnv(...)
6. └─reticulate::virtualenv_create(...)
7. └─reticulate:::pip_install(python, packages)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Ibex.Rmd' failed with diagnostics:
Error installing package(s): "'keras==3.6.*'", "'tensorflow==2.18.*'", "'h5py==3.13'", "'numpy==1.26'"
--- failed re-building ‘Ibex.Rmd’
SUMMARY: processing the following file failed:
‘Ibex.Rmd’
Error: Vignette re-building failed.
Execution halted