Jacques Serizay
| Snapshot Date: 2026-03-13 13:40 -0400 (Fri, 13 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/HiCool |
| git_branch: devel |
| git_last_commit: b6b10d2 |
| git_last_commit_date: 2026-03-13 08:35:28 -0400 (Fri, 13 Mar 2026) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-14 11:34 -0400 (Sat, 14 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4837 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 4050 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 988/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HiCool 1.11.2 (landing page) Jacques Serizay
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for HiCool in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HiCool package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCool.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HiCool |
| Version: 1.11.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HiCool |
| StartedAt: 2026-03-13 16:11:26 -0400 (Fri, 13 Mar 2026) |
| EndedAt: 2026-03-13 16:12:41 -0400 (Fri, 13 Mar 2026) |
| EllapsedTime: 74.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HiCool
###
##############################################################################
##############################################################################
* checking for file ‘HiCool/DESCRIPTION’ ... OK
* preparing ‘HiCool’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ...sh: line 1: 82231 Abort trap: 6 '/Library/Frameworks/R.framework/Resources/bin/Rscript' --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)" > '/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//Rtmp95KNUE/xshell13ec170e2f05d' 2>&1
ERROR
--- re-building ‘HiCool.Rmd’ using rmarkdown
Retrieving notices: ...working... /Users/biocbuild/Library/Caches/org.R-project.R/R/biocconda/24.11.3-0/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host 'anaconda.mgb.org'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings
warnings.warn(
/Users/biocbuild/Library/Caches/org.R-project.R/R/biocconda/24.11.3-0/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host 'anaconda.mgb.org'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings
warnings.warn(
done
Channels:
- conda-forge
- bioconda
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/Library/Caches/org.R-project.R/R/HiCool/env1/0.2.0
added / updated specs:
- bowtie2==2.5.4
- chromosight==1.6.3
- cooler==0.10.3
- hicstuff==3.2.4
- numpy==1.26.4
- pairtools==1.1.3
- python==3.12.11
- samtools==1.22.1
The following packages will be downloaded:
package | build
---------------------------|-----------------
attrs-25.4.0 | pyhcf101f3_1 63 KB conda-forge
aws-c-auth-0.9.6 | ha02d361_1 113 KB conda-forge
aws-c-cal-0.9.13 | h6ee9776_1 44 KB conda-forge
aws-c-common-0.12.6 | hc919400_0 219 KB conda-forge
aws-c-compression-0.3.2 | h3e7f9b5_0 21 KB conda-forge
aws-c-event-stream-0.5.9 | hd533cd8_2 52 KB conda-forge
aws-c-http-0.10.10 | ha1850f6_0 168 KB conda-forge
aws-c-io-0.26.1 | h4137820_2 173 KB conda-forge
aws-c-mqtt-0.14.0 | h5721393_1 152 KB conda-forge
aws-c-s3-0.11.5 | h7d214dc_3 127 KB conda-forge
aws-c-sdkutils-0.2.4 | h16f91aa_4 52 KB conda-forge
aws-checksums-0.2.10 | h3e7f9b5_0 90 KB conda-forge
aws-crt-cpp-0.37.3 | hcfbc53e_0 263 KB conda-forge
aws-sdk-cpp-1.11.747 | h35a1687_1 3.1 MB conda-forge
azure-core-cpp-1.16.2 | he5ae378_0 284 KB conda-forge
azure-identity-cpp-1.13.3 | h810541e_1 164 KB conda-forge
azure-storage-blobs-cpp-12.16.0| hc57151b_1 417 KB conda-forge
azure-storage-common-cpp-12.12.0| he467506_1 119 KB conda-forge
azure-storage-files-datalake-cpp-12.14.0| hf8a9d22_1 194 KB conda-forge
backports.zstd-1.3.0 | py312h44dc372_0 235 KB conda-forge
biopython-1.86 | py312h2bbb03f_1 3.1 MB conda-forge
bokeh-3.9.0 | pyhd8ed1ab_0 4.0 MB conda-forge
bowtie2-2.5.4 | hdd4e3a4_7 807 KB bioconda
brotli-1.2.0 | h7d5ae5b_1 20 KB conda-forge
brotli-bin-1.2.0 | hc919400_1 18 KB conda-forge
brotli-python-1.2.0 | py312h0dfefe5_1 351 KB conda-forge
certifi-2026.2.25 | pyhd8ed1ab_0 148 KB conda-forge
charset-normalizer-3.4.5 | pyhd8ed1ab_0 52 KB conda-forge
click-8.3.1 | pyh8f84b5b_1 95 KB conda-forge
cloudpickle-3.1.2 | pyhcf101f3_1 27 KB conda-forge
contourpy-1.3.3 | py312h3093aea_4 279 KB conda-forge
cycler-0.12.1 | pyhcf101f3_2 14 KB conda-forge
cytoolz-1.1.0 | py312h2bbb03f_2 578 KB conda-forge
dask-2026.1.2 | pyhcf101f3_1 11 KB conda-forge
dask-core-2026.1.2 | pyhcf101f3_0 1.0 MB conda-forge
dill-0.4.1 | pyhcf101f3_0 93 KB conda-forge
distributed-2026.1.2 | pyhcf101f3_1 825 KB conda-forge
fonttools-4.62.0 | py312h04c11ed_0 2.7 MB conda-forge
freetype-2.14.2 | hce30654_0 170 KB conda-forge
fsspec-2026.2.0 | pyhd8ed1ab_0 145 KB conda-forge
h5py-3.15.1 |nompi_py312h4eecd6b_101 1.1 MB conda-forge
jinja2-3.1.6 | pyhcf101f3_1 118 KB conda-forge
joblib-1.5.3 | pyhd8ed1ab_0 221 KB conda-forge
jsonschema-4.26.0 | pyhcf101f3_0 80 KB conda-forge
kiwisolver-1.5.0 | py312h3093aea_0 67 KB conda-forge
lerc-4.1.0 | h1eee2c3_0 160 KB conda-forge
libabseil-20260107.1 | cxx17_h2062a1b_0 1.2 MB conda-forge
libarrow-23.0.1 | h5390cfe_4_cpu 4.0 MB conda-forge
libarrow-acero-23.0.1 | hbf36091_4_cpu 527 KB conda-forge
libarrow-compute-23.0.1 | h4dbefc3_4_cpu 2.2 MB conda-forge
libarrow-dataset-23.0.1 | hbf36091_4_cpu 524 KB conda-forge
libarrow-substrait-23.0.1 | h05be00f_4_cpu 461 KB conda-forge
libbrotlicommon-1.2.0 | hc919400_1 78 KB conda-forge
libbrotlidec-1.2.0 | hc919400_1 29 KB conda-forge
libbrotlienc-1.2.0 | hc919400_1 284 KB conda-forge
libfreetype-2.14.2 | hce30654_0 8 KB conda-forge
libfreetype6-2.14.2 | hdfa99f5_0 330 KB conda-forge
libgoogle-cloud-2.39.0 | h2f60c08_1 861 KB conda-forge
libgoogle-cloud-storage-2.39.0| ha114238_1 512 KB conda-forge
libgrpc-1.78.0 | h3e3f78d_1 4.6 MB conda-forge
libopentelemetry-cpp-1.21.0| h08d5cc3_2 547 KB conda-forge
libopentelemetry-cpp-headers-1.21.0| hce30654_2 356 KB conda-forge
libparquet-23.0.1 | h7a13205_4_cpu 1.0 MB conda-forge
libpng-1.6.55 | h132b30e_0 282 KB conda-forge
libprotobuf-6.33.5 | h4a5acfd_0 2.6 MB conda-forge
libre2-11-2025.11.05 | h4c27e2a_1 162 KB conda-forge
libutf8proc-2.11.3 | h2431656_0 86 KB conda-forge
libxml2-2.15.2 | h8d039ee_0 40 KB conda-forge
libxml2-16-2.15.2 | h5ef1a60_0 455 KB conda-forge
lz4-4.4.5 | py312h2b25a0d_1 123 KB conda-forge
markupsafe-3.0.3 | py312h04c11ed_1 25 KB conda-forge
multiprocess-0.70.19 | py312hb3ab3e3_0 363 KB conda-forge
narwhals-2.18.0 | pyhcf101f3_0 274 KB conda-forge
nlohmann_json-3.12.0 | h784d473_1 134 KB conda-forge
orc-2.3.0 | hd11884d_0 535 KB conda-forge
packaging-26.0 | pyhcf101f3_0 70 KB conda-forge
pandas-3.0.1 | py312hae6be28_0 13.3 MB conda-forge
pip-26.0.1 | pyh8b19718_0 1.1 MB conda-forge
psutil-7.2.2 | py312hb3ab3e3_0 233 KB conda-forge
pyarrow-23.0.1 | py312h1f38498_0 28 KB conda-forge
pyarrow-core-23.0.1 |py312h21b41d0_0_cpu 3.7 MB conda-forge
pyfastx-2.3.0 | py312h32e7321_2 633 KB bioconda
pyparsing-3.3.2 | pyhcf101f3_0 108 KB conda-forge
pyyaml-6.0.3 | py312h04c11ed_1 183 KB conda-forge
re2-2025.11.05 | ha480c28_1 27 KB conda-forge
requests-2.32.5 | pyhcf101f3_1 62 KB conda-forge
rpds-py-0.30.0 | py312h6ef9ec0_0 350 KB conda-forge
scikit-learn-1.8.0 |np2py312he5ca3e3_1 8.7 MB conda-forge
scipy-1.17.1 | py312h0f234b1_0 13.3 MB conda-forge
setuptools-82.0.1 | pyh332efcf_0 625 KB conda-forge
tornado-6.5.4 | py312h4409184_0 835 KB conda-forge
unicodedata2-17.0.1 | py312h2bbb03f_0 406 KB conda-forge
urllib3-2.6.3 | pyhd8ed1ab_0 101 KB conda-forge
wheel-0.46.3 | pyhd8ed1ab_0 31 KB conda-forge
xyzservices-2025.11.0 | pyhd8ed1ab_0 50 KB conda-forge
zipp-3.23.0 | pyhcf101f3_1 24 KB conda-forge
------------------------------------------------------------
Total: 88.4 MB
The following NEW packages will be INSTALLED:
_openmp_mutex conda-forge/osx-arm64::_openmp_mutex-4.5-7_kmp_llvm
asciitree conda-forge/noarch::asciitree-0.3.3-py_2
attrs conda-forge/noarch::attrs-25.4.0-pyhcf101f3_1
aws-c-auth conda-forge/osx-arm64::aws-c-auth-0.9.6-ha02d361_1
aws-c-cal conda-forge/osx-arm64::aws-c-cal-0.9.13-h6ee9776_1
aws-c-common conda-forge/osx-arm64::aws-c-common-0.12.6-hc919400_0
aws-c-compression conda-forge/osx-arm64::aws-c-compression-0.3.2-h3e7f9b5_0
aws-c-event-stream conda-forge/osx-arm64::aws-c-event-stream-0.5.9-hd533cd8_2
aws-c-http conda-forge/osx-arm64::aws-c-http-0.10.10-ha1850f6_0
aws-c-io conda-forge/osx-arm64::aws-c-io-0.26.1-h4137820_2
aws-c-mqtt conda-forge/osx-arm64::aws-c-mqtt-0.14.0-h5721393_1
aws-c-s3 conda-forge/osx-arm64::aws-c-s3-0.11.5-h7d214dc_3
aws-c-sdkutils conda-forge/osx-arm64::aws-c-sdkutils-0.2.4-h16f91aa_4
aws-checksums conda-forge/osx-arm64::aws-checksums-0.2.10-h3e7f9b5_0
aws-crt-cpp conda-forge/osx-arm64::aws-crt-cpp-0.37.3-hcfbc53e_0
aws-sdk-cpp conda-forge/osx-arm64::aws-sdk-cpp-1.11.747-h35a1687_1
azure-core-cpp conda-forge/osx-arm64::azure-core-cpp-1.16.2-he5ae378_0
azure-identity-cpp conda-forge/osx-arm64::azure-identity-cpp-1.13.3-h810541e_1
azure-storage-blo~ conda-forge/osx-arm64::azure-storage-blobs-cpp-12.16.0-hc57151b_1
azure-storage-com~ conda-forge/osx-arm64::azure-storage-common-cpp-12.12.0-he467506_1
azure-storage-fil~ conda-forge/osx-arm64::azure-storage-files-datalake-cpp-12.14.0-hf8a9d22_1
backports.zstd conda-forge/osx-arm64::backports.zstd-1.3.0-py312h44dc372_0
bioframe bioconda/noarch::bioframe-0.8.0-pyhdfd78af_0
biopython conda-forge/osx-arm64::biopython-1.86-py312h2bbb03f_1
bokeh conda-forge/noarch::bokeh-3.9.0-pyhd8ed1ab_0
bowtie2 bioconda/osx-arm64::bowtie2-2.5.4-hdd4e3a4_7
brotli conda-forge/osx-arm64::brotli-1.2.0-h7d5ae5b_1
brotli-bin conda-forge/osx-arm64::brotli-bin-1.2.0-hc919400_1
brotli-python conda-forge/osx-arm64::brotli-python-1.2.0-py312h0dfefe5_1
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-hd037594_9
c-ares conda-forge/osx-arm64::c-ares-1.34.6-hc919400_0
ca-certificates conda-forge/noarch::ca-certificates-2026.2.25-hbd8a1cb_0
cached-property conda-forge/noarch::cached-property-1.5.2-hd8ed1ab_1
cached_property conda-forge/noarch::cached_property-1.5.2-pyha770c72_1
certifi conda-forge/noarch::certifi-2026.2.25-pyhd8ed1ab_0
charset-normalizer conda-forge/noarch::charset-normalizer-3.4.5-pyhd8ed1ab_0
chromosight bioconda/noarch::chromosight-1.6.3-pyhdfd78af_0
click conda-forge/noarch::click-8.3.1-pyh8f84b5b_1
cloudpickle conda-forge/noarch::cloudpickle-3.1.2-pyhcf101f3_1
contourpy conda-forge/osx-arm64::contourpy-1.3.3-py312h3093aea_4
cooler bioconda/noarch::cooler-0.10.3-pyhdfd78af_0
coreutils conda-forge/osx-arm64::coreutils-9.5-h93a5062_0
cycler conda-forge/noarch::cycler-0.12.1-pyhcf101f3_2
cytoolz conda-forge/osx-arm64::cytoolz-1.1.0-py312h2bbb03f_2
dask conda-forge/noarch::dask-2026.1.2-pyhcf101f3_1
dask-core conda-forge/noarch::dask-core-2026.1.2-pyhcf101f3_0
dill conda-forge/noarch::dill-0.4.1-pyhcf101f3_0
distributed conda-forge/noarch::distributed-2026.1.2-pyhcf101f3_1
docopt conda-forge/noarch::docopt-0.6.2-pyhd8ed1ab_2
fonttools conda-forge/osx-arm64::fonttools-4.62.0-py312h04c11ed_0
freetype conda-forge/osx-arm64::freetype-2.14.2-hce30654_0
fsspec conda-forge/noarch::fsspec-2026.2.0-pyhd8ed1ab_0
gflags conda-forge/osx-arm64::gflags-2.2.2-hf9b8971_1005
glog conda-forge/osx-arm64::glog-0.7.1-heb240a5_0
h2 conda-forge/noarch::h2-4.3.0-pyhcf101f3_0
h5py conda-forge/osx-arm64::h5py-3.15.1-nompi_py312h4eecd6b_101
hdf5 conda-forge/osx-arm64::hdf5-1.14.6-nompi_had3affe_106
hicstuff bioconda/noarch::hicstuff-3.2.4-pyhdfd78af_0
hpack conda-forge/noarch::hpack-4.1.0-pyhd8ed1ab_0
htslib bioconda/osx-arm64::htslib-1.22.1-hfcd771d_0
hyperframe conda-forge/noarch::hyperframe-6.1.0-pyhd8ed1ab_0
icu conda-forge/osx-arm64::icu-78.2-hef89b57_0
idna conda-forge/noarch::idna-3.11-pyhd8ed1ab_0
importlib-metadata conda-forge/noarch::importlib-metadata-8.7.0-pyhe01879c_1
jinja2 conda-forge/noarch::jinja2-3.1.6-pyhcf101f3_1
joblib conda-forge/noarch::joblib-1.5.3-pyhd8ed1ab_0
jsonschema conda-forge/noarch::jsonschema-4.26.0-pyhcf101f3_0
jsonschema-specif~ conda-forge/noarch::jsonschema-specifications-2025.9.1-pyhcf101f3_0
k8 bioconda/osx-arm64::k8-1.2-hda5e58c_6
kiwisolver conda-forge/osx-arm64::kiwisolver-1.5.0-py312h3093aea_0
krb5 conda-forge/osx-arm64::krb5-1.22.2-h385eeb1_0
lcms2 conda-forge/osx-arm64::lcms2-2.17-h7eeda09_0
lerc conda-forge/osx-arm64::lerc-4.1.0-h1eee2c3_0
libabseil conda-forge/osx-arm64::libabseil-20260107.1-cxx17_h2062a1b_0
libaec conda-forge/osx-arm64::libaec-1.1.5-h8664d51_0
libarrow conda-forge/osx-arm64::libarrow-23.0.1-h5390cfe_4_cpu
libarrow-acero conda-forge/osx-arm64::libarrow-acero-23.0.1-hbf36091_4_cpu
libarrow-compute conda-forge/osx-arm64::libarrow-compute-23.0.1-h4dbefc3_4_cpu
libarrow-dataset conda-forge/osx-arm64::libarrow-dataset-23.0.1-hbf36091_4_cpu
libarrow-substrait conda-forge/osx-arm64::libarrow-substrait-23.0.1-h05be00f_4_cpu
libblas conda-forge/osx-arm64::libblas-3.11.0-5_h51639a9_openblas
libbrotlicommon conda-forge/osx-arm64::libbrotlicommon-1.2.0-hc919400_1
libbrotlidec conda-forge/osx-arm64::libbrotlidec-1.2.0-hc919400_1
libbrotlienc conda-forge/osx-arm64::libbrotlienc-1.2.0-hc919400_1
libcblas conda-forge/osx-arm64::libcblas-3.11.0-5_hb0561ab_openblas
libcrc32c conda-forge/osx-arm64::libcrc32c-1.1.2-hbdafb3b_0
libcurl conda-forge/osx-arm64::libcurl-8.19.0-hd5a2499_0
libcxx conda-forge/osx-arm64::libcxx-22.1.1-h55c6f16_0
libdeflate conda-forge/osx-arm64::libdeflate-1.22-hd74edd7_0
libedit conda-forge/osx-arm64::libedit-3.1.20250104-pl5321hafb1f1b_0
libev conda-forge/osx-arm64::libev-4.33-h93a5062_2
libevent conda-forge/osx-arm64::libevent-2.1.12-h2757513_1
libexpat conda-forge/osx-arm64::libexpat-2.7.4-hf6b4638_0
libffi conda-forge/osx-arm64::libffi-3.4.6-h1da3d7d_1
libfreetype conda-forge/osx-arm64::libfreetype-2.14.2-hce30654_0
libfreetype6 conda-forge/osx-arm64::libfreetype6-2.14.2-hdfa99f5_0
libgcc conda-forge/osx-arm64::libgcc-15.2.0-hcbb3090_18
libgfortran conda-forge/osx-arm64::libgfortran-15.2.0-h07b0088_18
libgfortran5 conda-forge/osx-arm64::libgfortran5-15.2.0-hdae7583_18
libgoogle-cloud conda-forge/osx-arm64::libgoogle-cloud-2.39.0-h2f60c08_1
libgoogle-cloud-s~ conda-forge/osx-arm64::libgoogle-cloud-storage-2.39.0-ha114238_1
libgrpc conda-forge/osx-arm64::libgrpc-1.78.0-h3e3f78d_1
libiconv conda-forge/osx-arm64::libiconv-1.18-h23cfdf5_2
libjpeg-turbo conda-forge/osx-arm64::libjpeg-turbo-3.1.2-hc919400_0
liblapack conda-forge/osx-arm64::liblapack-3.11.0-5_hd9741b5_openblas
liblzma conda-forge/osx-arm64::liblzma-5.8.2-h8088a28_0
libnghttp2 conda-forge/osx-arm64::libnghttp2-1.67.0-hc438710_0
libopenblas conda-forge/osx-arm64::libopenblas-0.3.30-openmp_ha158390_4
libopentelemetry-~ conda-forge/osx-arm64::libopentelemetry-cpp-1.21.0-h08d5cc3_2
libopentelemetry-~ conda-forge/osx-arm64::libopentelemetry-cpp-headers-1.21.0-hce30654_2
libparquet conda-forge/osx-arm64::libparquet-23.0.1-h7a13205_4_cpu
libpng conda-forge/osx-arm64::libpng-1.6.55-h132b30e_0
libprotobuf conda-forge/osx-arm64::libprotobuf-6.33.5-h4a5acfd_0
libre2-11 conda-forge/osx-arm64::libre2-11-2025.11.05-h4c27e2a_1
libsqlite conda-forge/osx-arm64::libsqlite-3.52.0-h1ae2325_0
libssh2 conda-forge/osx-arm64::libssh2-1.11.1-h1590b86_0
libthrift conda-forge/osx-arm64::libthrift-0.22.0-h14a376c_1
libtiff conda-forge/osx-arm64::libtiff-4.7.0-ha962b0a_2
libutf8proc conda-forge/osx-arm64::libutf8proc-2.11.3-h2431656_0
libwebp-base conda-forge/osx-arm64::libwebp-base-1.6.0-h07db88b_0
libxcb conda-forge/osx-arm64::libxcb-1.17.0-hdb1d25a_0
libxml2 conda-forge/osx-arm64::libxml2-2.15.2-h8d039ee_0
libxml2-16 conda-forge/osx-arm64::libxml2-16-2.15.2-h5ef1a60_0
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
llvm-openmp conda-forge/osx-arm64::llvm-openmp-22.1.0-hc7d1edf_0
locket conda-forge/noarch::locket-1.0.0-pyhd8ed1ab_0
lz4 conda-forge/osx-arm64::lz4-4.4.5-py312h2b25a0d_1
lz4-c conda-forge/osx-arm64::lz4-c-1.10.0-h286801f_1
markupsafe conda-forge/osx-arm64::markupsafe-3.0.3-py312h04c11ed_1
matplotlib-base conda-forge/osx-arm64::matplotlib-base-3.10.8-py312h605b88b_0
minimap2 bioconda/osx-arm64::minimap2-2.30-hba9b596_0
msgpack-python conda-forge/osx-arm64::msgpack-python-1.1.2-py312h84eede6_1
multiprocess conda-forge/osx-arm64::multiprocess-0.70.19-py312hb3ab3e3_0
munkres conda-forge/noarch::munkres-1.1.4-pyhd8ed1ab_1
narwhals conda-forge/noarch::narwhals-2.18.0-pyhcf101f3_0
ncurses conda-forge/osx-arm64::ncurses-6.5-h5e97a16_3
nlohmann_json conda-forge/osx-arm64::nlohmann_json-3.12.0-h784d473_1
numpy conda-forge/osx-arm64::numpy-1.26.4-py312h8442bc7_0
openjpeg conda-forge/osx-arm64::openjpeg-2.5.3-h889cd5d_1
openssl conda-forge/osx-arm64::openssl-3.6.1-hd24854e_1
orc conda-forge/osx-arm64::orc-2.3.0-hd11884d_0
packaging conda-forge/noarch::packaging-26.0-pyhcf101f3_0
pairix bioconda/osx-arm64::pairix-0.3.9-py312h93f676b_0
pairtools bioconda/osx-arm64::pairtools-1.1.3-py312h6d1645c_0
pandas conda-forge/osx-arm64::pandas-3.0.1-py312hae6be28_0
partd conda-forge/noarch::partd-1.4.2-pyhd8ed1ab_0
perl conda-forge/osx-arm64::perl-5.32.1-7_h4614cfb_perl5
pillow conda-forge/osx-arm64::pillow-11.3.0-py312h2525f64_3
pip conda-forge/noarch::pip-26.0.1-pyh8b19718_0
prometheus-cpp conda-forge/osx-arm64::prometheus-cpp-1.3.0-h0967b3e_0
psutil conda-forge/osx-arm64::psutil-7.2.2-py312hb3ab3e3_0
pthread-stubs conda-forge/osx-arm64::pthread-stubs-0.4-hd74edd7_1002
pyarrow conda-forge/osx-arm64::pyarrow-23.0.1-py312h1f38498_0
pyarrow-core conda-forge/osx-arm64::pyarrow-core-23.0.1-py312h21b41d0_0_cpu
pyfaidx bioconda/noarch::pyfaidx-0.9.0.3-pyhdfd78af_0
pyfastx bioconda/osx-arm64::pyfastx-2.3.0-py312h32e7321_2
pyparsing conda-forge/noarch::pyparsing-3.3.2-pyhcf101f3_0
pysam bioconda/osx-arm64::pysam-0.23.3-py312h97124e9_1
pysocks conda-forge/noarch::pysocks-1.7.1-pyha55dd90_7
python conda-forge/osx-arm64::python-3.12.11-hc22306f_0_cpython
python-dateutil conda-forge/noarch::python-dateutil-2.9.0.post0-pyhe01879c_2
python_abi conda-forge/noarch::python_abi-3.12-8_cp312
pyvcf3 bioconda/osx-arm64::pyvcf3-1.0.4-py312h7874b93_0
pyyaml conda-forge/osx-arm64::pyyaml-6.0.3-py312h04c11ed_1
qhull conda-forge/osx-arm64::qhull-2020.2-h420ef59_5
re2 conda-forge/osx-arm64::re2-2025.11.05-ha480c28_1
readline conda-forge/osx-arm64::readline-8.3-h46df422_0
referencing conda-forge/noarch::referencing-0.37.0-pyhcf101f3_0
requests conda-forge/noarch::requests-2.32.5-pyhcf101f3_1
rpds-py conda-forge/osx-arm64::rpds-py-0.30.0-py312h6ef9ec0_0
samtools bioconda/osx-arm64::samtools-1.22.1-h267f7b9_0
scikit-learn conda-forge/osx-arm64::scikit-learn-1.8.0-np2py312he5ca3e3_1
scipy conda-forge/osx-arm64::scipy-1.17.1-py312h0f234b1_0
setuptools conda-forge/noarch::setuptools-82.0.1-pyh332efcf_0
simplejson conda-forge/osx-arm64::simplejson-3.20.2-py312h4409184_1
six conda-forge/noarch::six-1.17.0-pyhe01879c_1
snappy conda-forge/osx-arm64::snappy-1.2.2-hada39a4_1
sortedcontainers conda-forge/noarch::sortedcontainers-2.4.0-pyhd8ed1ab_1
tblib conda-forge/noarch::tblib-3.2.2-pyhcf101f3_0
threadpoolctl conda-forge/noarch::threadpoolctl-3.6.0-pyhecae5ae_0
tk conda-forge/osx-arm64::tk-8.6.13-h010d191_3
toolz conda-forge/noarch::toolz-1.1.0-pyhd8ed1ab_1
tornado conda-forge/osx-arm64::tornado-6.5.4-py312h4409184_0
typing_extensions conda-forge/noarch::typing_extensions-4.15.0-pyhcf101f3_0
tzdata conda-forge/noarch::tzdata-2025c-hc9c84f9_1
unicodedata2 conda-forge/osx-arm64::unicodedata2-17.0.1-py312h2bbb03f_0
urllib3 conda-forge/noarch::urllib3-2.6.3-pyhd8ed1ab_0
wheel conda-forge/noarch::wheel-0.46.3-pyhd8ed1ab_0
xorg-libxau conda-forge/osx-arm64::xorg-libxau-1.0.12-hc919400_1
xorg-libxdmcp conda-forge/osx-arm64::xorg-libxdmcp-1.1.5-hc919400_1
xyzservices conda-forge/noarch::xyzservices-2025.11.0-pyhd8ed1ab_0
yaml conda-forge/osx-arm64::yaml-0.2.5-h925e9cb_3
zict conda-forge/noarch::zict-3.0.0-pyhd8ed1ab_1
zipp conda-forge/noarch::zipp-3.23.0-pyhcf101f3_1
zlib conda-forge/osx-arm64::zlib-1.3.1-h8359307_2
zstd conda-forge/osx-arm64::zstd-1.5.7-hbf9d68e_6
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
OMP: Error #15: Initializing libomp.dylib, but found libomp.dylib already initialized.
OMP: Hint This means that multiple copies of the OpenMP runtime have been linked into the program. That is dangerous, since it can degrade performance or cause incorrect results. The best thing to do is to ensure that only a single OpenMP runtime is linked into the process, e.g. by avoiding static linking of the OpenMP runtime in any library. As an unsafe, unsupported, undocumented workaround you can set the environment variable KMP_DUPLICATE_LIB_OK=TRUE to allow the program to continue to execute, but that may cause crashes or silently produce incorrect results. For more information, please see http://openmp.llvm.org/