Merve Sahin
| Snapshot Date: 2025-10-10 13:45 -0400 (Fri, 10 Oct 2025) |
| git_url: https://git.bioconductor.org/packages/HiCDCPlus |
| git_branch: devel |
| git_last_commit: 3954db1 |
| git_last_commit_date: 2025-04-15 12:20:00 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-10-11 12:03 -0400 (Sat, 11 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4864 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4652 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4597 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4586 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 973/2346 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HiCDCPlus 1.17.0 (landing page) Merve Sahin
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | ERROR | ||||||||||
|
To the developers/maintainers of the HiCDCPlus package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCDCPlus.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HiCDCPlus |
| Version: 1.17.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 HiCDCPlus |
| StartedAt: 2025-10-10 18:16:05 -0400 (Fri, 10 Oct 2025) |
| EndedAt: 2025-10-10 18:17:33 -0400 (Fri, 10 Oct 2025) |
| EllapsedTime: 88.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 HiCDCPlus ### ############################################################################## ############################################################################## * checking for file ‘HiCDCPlus/DESCRIPTION’ ... OK * preparing ‘HiCDCPlus’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘HiCDCPlus.Rmd’ using rmarkdown WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2025-10-10T18:17:24,699] [Globals.java:138] [main] Development mode is enabled Using 1 CPU thread(s) for primary task Using 10 CPU thread(s) for secondary task Not including fragment map Start preprocess Writing header Writing body java.lang.NumberFormatException: For input string: "score" at java.base/jdk.internal.math.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:2054) at java.base/jdk.internal.math.FloatingDecimal.parseFloat(FloatingDecimal.java:122) at java.base/java.lang.Float.parseFloat(Float.java:556) at juicebox.tools.utils.original.mnditerator.MNDLineParser.updatePairScoreIfNeeded(MNDLineParser.java:88) at juicebox.tools.utils.original.mnditerator.MNDFileParser.parseShortFormat(MNDFileParser.java:105) at juicebox.tools.utils.original.mnditerator.MNDFileParser.parse(MNDFileParser.java:87) at juicebox.tools.utils.original.mnditerator.GenericPairIterator.advance(GenericPairIterator.java:56) at juicebox.tools.utils.original.mnditerator.AsciiPairIterator.<init>(AsciiPairIterator.java:55) at juicebox.tools.utils.original.mnditerator.PairIterator.getIterator(PairIterator.java:54) at juicebox.tools.utils.original.Preprocessor.computeWholeGenomeMatrix(Preprocessor.java:583) at juicebox.tools.utils.original.Preprocessor.writeBody(Preprocessor.java:674) at juicebox.tools.utils.original.Preprocessor.preprocess(Preprocessor.java:436) at juicebox.tools.clt.old.PreProcessing.run(PreProcessing.java:165) at juicebox.tools.HiCTools.main(HiCTools.java:94) Warning: stack imbalance in 'withVisible', 57 then 52 Warning: stack imbalance in 'lapply', 25 then 15 *** caught segfault *** address 0x8, cause 'memory not mapped' Segmentation fault (core dumped)