Maurizio Pellegrino
| Snapshot Date: 2024-11-24 13:40 -0500 (Sun, 24 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/Harshlight |
| git_branch: devel |
| git_last_commit: ed62604 |
| git_last_commit_date: 2024-10-29 09:26:34 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-11-25 11:37 -0500 (Mon, 25 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4748 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4459 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4349 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 929/2272 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Harshlight 1.79.0 (landing page) Maurizio Pellegrino
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the Harshlight package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Harshlight.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Harshlight |
| Version: 1.79.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL Harshlight |
| StartedAt: 2024-11-24 15:14:16 -0500 (Sun, 24 Nov 2024) |
| EndedAt: 2024-11-24 15:14:27 -0500 (Sun, 24 Nov 2024) |
| EllapsedTime: 11.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL Harshlight
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* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘Harshlight’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c Harshlight.c -o Harshlight.o
Harshlight.c: In function ‘extended_defects’:
Harshlight.c:564:20: warning: variable ‘p_num_points’ set but not used [-Wunused-but-set-variable]
564 | int num_points, *p_num_points; //number of points inside the median kernel
| ^~~~~~~~~~~~
Harshlight.c: In function ‘image_dilation’:
Harshlight.c:948:10: warning: variable ‘cell_value’ set but not used [-Wunused-but-set-variable]
948 | double cell_value;
| ^~~~~~~~~~
Harshlight.c: In function ‘norm’:
Harshlight.c:1316:27: warning: unused variable ‘sorted2’ [-Wunused-variable]
1316 | double *sorted; double *sorted2;
| ^~~~~~~
Harshlight.c: In function ‘report_overall_header’:
Harshlight.c:1471:26: warning: unknown conversion type character ‘)’ in format [-Wformat=]
1471 | PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 215, *diff_br);
| ^
Harshlight.c:1474:26: warning: unknown conversion type character ‘)’ in format [-Wformat=]
1474 | PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 230, *diff_dr);
| ^
Harshlight.c: In function ‘chip_summary’:
Harshlight.c:1532:107: warning: unknown conversion type character ‘)’ in format [-Wformat=]
1532 | PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
| ^
Harshlight.c:1542:26: warning: unknown conversion type character ‘)’ in format [-Wformat=]
1542 | PP "%d %d moveto (%.2f%) show\n", x_val_1, y_text - 100, *perc_c);
| ^
Harshlight.c:1543:26: warning: unknown conversion type character ‘)’ in format [-Wformat=]
1543 | PP "%d %d moveto (%.2f%) show\n", x_val_2, y_text - 100, *perc_d);
| ^
Harshlight.c: In function ‘extended_stop’:
Harshlight.c:1555:107: warning: unknown conversion type character ‘)’ in format [-Wformat=]
1555 | PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
| ^
gcc -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o Harshlight.so Harshlight.o -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.21-bioc/R/site-library/00LOCK-Harshlight/00new/Harshlight/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Harshlight)