| Back to Build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-04 11:33 -0400 (Mon, 04 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4844 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1007/2366 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.19.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.19.0 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.24-bioc/R/site-library --timings HPiP_1.19.0.tar.gz |
| StartedAt: 2026-05-04 00:42:50 -0400 (Mon, 04 May 2026) |
| EndedAt: 2026-05-04 00:57:50 -0400 (Mon, 04 May 2026) |
| EllapsedTime: 900.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.24-bioc/R/site-library --timings HPiP_1.19.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.24-bioc/meat/HPiP.Rcheck’
* using R version 4.6.0 RC (2026-04-17 r89917)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-05-04 04:42:51 UTC
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.19.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
corr_plot 34.779 0.300 35.129
var_imp 34.075 0.471 34.574
FSmethod 33.855 0.567 34.486
pred_ensembel 13.024 0.096 11.862
enrichfindP 0.591 0.033 8.211
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.24-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.24-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.19.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.6.0 RC (2026-04-17 r89917) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 95.035797
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 96.207557
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 98.096513
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 95.367870
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 102.076179
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 97.785994
final value 94.466823
converged
Fitting Repeat 2
# weights: 305
initial value 97.697636
iter 10 value 94.326054
iter 10 value 94.326054
iter 10 value 94.326054
final value 94.326054
converged
Fitting Repeat 3
# weights: 305
initial value 107.881865
final value 94.466823
converged
Fitting Repeat 4
# weights: 305
initial value 108.932972
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 94.765641
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 99.006404
iter 10 value 93.757213
final value 93.747673
converged
Fitting Repeat 2
# weights: 507
initial value 97.746951
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 101.600061
iter 10 value 93.891063
iter 20 value 93.726256
final value 93.726244
converged
Fitting Repeat 4
# weights: 507
initial value 115.761581
iter 10 value 94.431926
iter 20 value 94.427423
final value 94.326094
converged
Fitting Repeat 5
# weights: 507
initial value 112.721253
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 98.982834
iter 10 value 94.423223
iter 20 value 94.256956
iter 30 value 94.139201
iter 40 value 93.974611
iter 50 value 92.309421
iter 60 value 89.318341
iter 70 value 86.952959
iter 80 value 85.155337
iter 90 value 84.679005
iter 100 value 84.248369
final value 84.248369
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 102.820010
iter 10 value 90.403351
iter 20 value 87.189989
iter 30 value 86.890926
iter 40 value 86.087861
iter 50 value 84.831167
iter 60 value 84.369137
iter 70 value 84.292438
iter 80 value 84.236486
final value 84.234884
converged
Fitting Repeat 3
# weights: 103
initial value 100.380436
iter 10 value 94.400557
iter 20 value 92.584409
iter 30 value 90.943456
iter 40 value 85.846824
iter 50 value 84.808517
iter 60 value 83.995999
iter 70 value 83.335195
iter 80 value 83.285176
iter 90 value 83.266088
iter 100 value 83.246166
final value 83.246166
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 103.446325
iter 10 value 94.509305
iter 20 value 94.400206
iter 30 value 94.097142
iter 40 value 87.228299
iter 50 value 86.038520
iter 60 value 85.190746
iter 70 value 84.961206
final value 84.956484
converged
Fitting Repeat 5
# weights: 103
initial value 104.780089
iter 10 value 94.468594
iter 20 value 93.127192
iter 30 value 92.430198
iter 40 value 92.412070
iter 50 value 92.303308
iter 60 value 92.242925
iter 70 value 92.116128
iter 80 value 87.629160
iter 90 value 83.558702
iter 100 value 82.558836
final value 82.558836
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 104.479219
iter 10 value 94.486284
iter 20 value 94.215024
iter 30 value 94.031434
iter 40 value 94.018137
iter 50 value 90.037267
iter 60 value 85.845653
iter 70 value 84.744292
iter 80 value 83.157676
iter 90 value 82.675070
iter 100 value 82.593285
final value 82.593285
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 123.127344
iter 10 value 94.619319
iter 20 value 94.489474
iter 30 value 88.411073
iter 40 value 86.762332
iter 50 value 85.079424
iter 60 value 84.861718
iter 70 value 84.778707
iter 80 value 84.029497
iter 90 value 83.653731
iter 100 value 83.621300
final value 83.621300
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.097516
iter 10 value 94.456731
iter 20 value 89.044307
iter 30 value 87.162073
iter 40 value 86.731489
iter 50 value 86.177545
iter 60 value 83.409168
iter 70 value 82.539068
iter 80 value 81.888883
iter 90 value 81.641280
iter 100 value 81.479213
final value 81.479213
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 120.617560
iter 10 value 94.300232
iter 20 value 88.762774
iter 30 value 87.648808
iter 40 value 86.067482
iter 50 value 83.499714
iter 60 value 82.037171
iter 70 value 81.523886
iter 80 value 81.325398
iter 90 value 81.246139
iter 100 value 81.217941
final value 81.217941
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 99.569561
iter 10 value 94.486412
iter 20 value 88.502461
iter 30 value 87.647429
iter 40 value 84.813623
iter 50 value 83.580443
iter 60 value 81.812204
iter 70 value 81.392098
iter 80 value 81.123575
iter 90 value 81.020362
iter 100 value 80.956334
final value 80.956334
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 112.211325
iter 10 value 94.992452
iter 20 value 93.292127
iter 30 value 87.998172
iter 40 value 86.490183
iter 50 value 86.209287
iter 60 value 85.956970
iter 70 value 82.609159
iter 80 value 81.601748
iter 90 value 81.332151
iter 100 value 80.880733
final value 80.880733
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 114.670733
iter 10 value 94.291798
iter 20 value 86.425190
iter 30 value 84.712489
iter 40 value 82.940811
iter 50 value 81.896963
iter 60 value 81.507382
iter 70 value 81.177935
iter 80 value 81.135155
iter 90 value 81.023697
iter 100 value 80.858051
final value 80.858051
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 102.691868
iter 10 value 94.608877
iter 20 value 92.849049
iter 30 value 86.880239
iter 40 value 85.799319
iter 50 value 84.769201
iter 60 value 83.158864
iter 70 value 81.602127
iter 80 value 81.266048
iter 90 value 80.830985
iter 100 value 80.566180
final value 80.566180
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.216853
iter 10 value 94.262249
iter 20 value 89.896104
iter 30 value 87.232593
iter 40 value 85.912961
iter 50 value 85.353158
iter 60 value 84.806254
iter 70 value 83.857071
iter 80 value 81.976778
iter 90 value 80.791239
iter 100 value 80.587548
final value 80.587548
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 117.612130
iter 10 value 94.657048
iter 20 value 94.252600
iter 30 value 90.267612
iter 40 value 89.726563
iter 50 value 88.091409
iter 60 value 85.743581
iter 70 value 83.344003
iter 80 value 82.358631
iter 90 value 81.889970
iter 100 value 81.716832
final value 81.716832
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.966983
final value 94.485859
converged
Fitting Repeat 2
# weights: 103
initial value 101.944624
final value 94.486020
converged
Fitting Repeat 3
# weights: 103
initial value 114.027384
final value 94.485832
converged
Fitting Repeat 4
# weights: 103
initial value 96.785931
iter 10 value 94.485893
final value 94.484220
converged
Fitting Repeat 5
# weights: 103
initial value 101.001841
final value 94.485791
converged
Fitting Repeat 1
# weights: 305
initial value 102.405736
iter 10 value 94.330947
iter 20 value 92.881926
iter 30 value 84.688819
iter 40 value 84.171710
iter 50 value 84.158649
final value 84.149959
converged
Fitting Repeat 2
# weights: 305
initial value 112.014093
iter 10 value 94.490753
iter 20 value 94.487807
iter 30 value 93.975852
iter 40 value 93.316427
iter 50 value 93.309823
iter 60 value 92.812643
iter 70 value 92.812459
final value 92.812430
converged
Fitting Repeat 3
# weights: 305
initial value 101.408223
iter 10 value 94.488402
iter 20 value 93.949921
iter 30 value 87.323122
iter 40 value 87.313000
iter 50 value 87.295814
iter 60 value 87.285786
iter 70 value 87.261718
iter 80 value 87.140586
iter 90 value 87.139529
iter 100 value 86.483131
final value 86.483131
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.367131
iter 10 value 94.489627
iter 20 value 93.853726
iter 30 value 85.915580
iter 40 value 84.083298
iter 50 value 80.535578
iter 60 value 80.517348
iter 70 value 80.512327
iter 80 value 80.511408
iter 90 value 80.455812
iter 100 value 80.384930
final value 80.384930
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 105.778015
iter 10 value 94.489137
iter 20 value 94.484256
iter 30 value 86.478566
iter 40 value 86.456898
iter 40 value 86.456898
iter 40 value 86.456898
final value 86.456898
converged
Fitting Repeat 1
# weights: 507
initial value 100.876903
iter 10 value 87.929498
iter 20 value 85.593949
iter 30 value 84.512466
iter 40 value 84.503905
iter 50 value 83.766462
iter 60 value 83.764734
iter 70 value 83.142973
iter 80 value 82.180736
iter 90 value 81.875225
iter 100 value 81.087313
final value 81.087313
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 101.002553
iter 10 value 94.451524
final value 94.451179
converged
Fitting Repeat 3
# weights: 507
initial value 110.095065
iter 10 value 94.333925
iter 20 value 93.984187
iter 30 value 84.893361
iter 40 value 83.750030
iter 50 value 83.740930
iter 50 value 83.740930
final value 83.740930
converged
Fitting Repeat 4
# weights: 507
initial value 97.537106
iter 10 value 94.449069
iter 20 value 94.192794
iter 30 value 87.259883
iter 40 value 86.267973
iter 50 value 86.261488
iter 60 value 86.237713
iter 70 value 86.164785
iter 80 value 85.697796
iter 90 value 85.495448
final value 85.494928
converged
Fitting Repeat 5
# weights: 507
initial value 101.269990
iter 10 value 93.528980
iter 20 value 93.522339
iter 30 value 92.645796
iter 40 value 92.643454
iter 50 value 92.638322
iter 60 value 92.623409
iter 70 value 91.612758
iter 80 value 85.918899
iter 90 value 84.282335
iter 100 value 82.761794
final value 82.761794
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.476050
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 100.805287
iter 10 value 94.032984
final value 94.032967
converged
Fitting Repeat 3
# weights: 103
initial value 106.271498
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 105.111145
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 96.545249
iter 10 value 93.452828
iter 20 value 88.740691
iter 30 value 86.728551
iter 40 value 86.121507
iter 50 value 86.098023
final value 86.097907
converged
Fitting Repeat 1
# weights: 305
initial value 113.400905
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 97.950645
iter 10 value 94.052876
final value 94.052465
converged
Fitting Repeat 3
# weights: 305
initial value 97.763877
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 114.100284
final value 94.032967
converged
Fitting Repeat 5
# weights: 305
initial value 95.958551
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 100.155616
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 120.818462
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 99.403238
final value 94.032967
converged
Fitting Repeat 4
# weights: 507
initial value 95.773550
iter 10 value 94.011188
iter 20 value 93.975647
final value 93.971431
converged
Fitting Repeat 5
# weights: 507
initial value 107.398171
final value 94.011561
converged
Fitting Repeat 1
# weights: 103
initial value 96.879671
iter 10 value 94.065880
iter 20 value 93.847042
iter 30 value 89.504920
iter 40 value 87.768151
iter 50 value 86.488738
iter 60 value 85.600982
iter 70 value 85.569394
iter 80 value 85.567681
final value 85.567660
converged
Fitting Repeat 2
# weights: 103
initial value 102.095355
iter 10 value 94.047621
iter 20 value 93.788438
iter 30 value 87.999658
iter 40 value 86.664497
iter 50 value 85.963804
iter 60 value 85.667245
iter 70 value 85.569789
iter 80 value 85.568225
final value 85.567660
converged
Fitting Repeat 3
# weights: 103
initial value 101.386199
iter 10 value 94.036101
iter 20 value 90.466276
iter 30 value 86.893033
iter 40 value 86.763312
iter 50 value 86.614101
iter 60 value 86.100044
iter 70 value 85.782140
final value 85.773810
converged
Fitting Repeat 4
# weights: 103
initial value 102.447377
iter 10 value 93.954859
iter 20 value 93.613834
iter 30 value 89.677766
iter 40 value 88.910239
iter 50 value 86.933050
iter 60 value 86.735055
iter 70 value 86.542990
iter 80 value 86.454488
iter 90 value 85.861251
iter 100 value 85.688582
final value 85.688582
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 98.561639
iter 10 value 94.056701
iter 20 value 94.028184
iter 30 value 92.775227
iter 40 value 92.132101
iter 50 value 89.002521
iter 60 value 87.237193
iter 70 value 86.309472
iter 80 value 86.100640
iter 90 value 86.099040
final value 86.099032
converged
Fitting Repeat 1
# weights: 305
initial value 103.465055
iter 10 value 93.692970
iter 20 value 89.351253
iter 30 value 87.152469
iter 40 value 86.304533
iter 50 value 86.010224
iter 60 value 85.527639
iter 70 value 84.654840
iter 80 value 83.846309
iter 90 value 83.659067
iter 100 value 83.482683
final value 83.482683
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.008618
iter 10 value 94.077295
iter 20 value 88.843682
iter 30 value 88.139820
iter 40 value 86.798396
iter 50 value 85.613754
iter 60 value 84.544482
iter 70 value 83.986503
iter 80 value 83.662361
iter 90 value 82.880911
iter 100 value 82.681137
final value 82.681137
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 113.907814
iter 10 value 94.009573
iter 20 value 88.409933
iter 30 value 86.899356
iter 40 value 86.151718
iter 50 value 85.487396
iter 60 value 83.196208
iter 70 value 82.682254
iter 80 value 82.564948
iter 90 value 82.353561
iter 100 value 82.209799
final value 82.209799
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.271640
iter 10 value 93.987652
iter 20 value 92.497732
iter 30 value 92.118886
iter 40 value 92.007009
iter 50 value 88.367834
iter 60 value 83.712082
iter 70 value 83.225171
iter 80 value 83.047099
iter 90 value 82.952094
iter 100 value 82.898451
final value 82.898451
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 108.109007
iter 10 value 93.994978
iter 20 value 90.483866
iter 30 value 89.685860
iter 40 value 85.676574
iter 50 value 85.285704
iter 60 value 85.118051
iter 70 value 83.797698
iter 80 value 82.911896
iter 90 value 82.603027
iter 100 value 82.291026
final value 82.291026
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 145.859965
iter 10 value 94.070679
iter 20 value 88.470223
iter 30 value 87.623286
iter 40 value 86.528753
iter 50 value 85.743727
iter 60 value 84.932027
iter 70 value 84.598061
iter 80 value 83.448265
iter 90 value 82.955498
iter 100 value 82.744706
final value 82.744706
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 103.198217
iter 10 value 94.034963
iter 20 value 93.944361
iter 30 value 88.382675
iter 40 value 84.399542
iter 50 value 83.270823
iter 60 value 82.827467
iter 70 value 82.760090
iter 80 value 82.458427
iter 90 value 82.250381
iter 100 value 82.136179
final value 82.136179
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.802430
iter 10 value 94.287537
iter 20 value 93.945843
iter 30 value 88.461534
iter 40 value 88.045091
iter 50 value 86.642739
iter 60 value 84.791582
iter 70 value 83.273229
iter 80 value 83.035011
iter 90 value 82.676395
iter 100 value 82.340844
final value 82.340844
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 104.074438
iter 10 value 93.531501
iter 20 value 87.532552
iter 30 value 85.509684
iter 40 value 84.694326
iter 50 value 83.382971
iter 60 value 82.827838
iter 70 value 82.128128
iter 80 value 82.030968
iter 90 value 81.985680
iter 100 value 81.974412
final value 81.974412
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 103.059399
iter 10 value 94.290016
iter 20 value 92.950597
iter 30 value 89.504586
iter 40 value 86.302763
iter 50 value 85.036199
iter 60 value 83.153486
iter 70 value 82.584428
iter 80 value 82.419120
iter 90 value 82.276880
iter 100 value 82.038479
final value 82.038479
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 110.580757
iter 10 value 93.124298
iter 20 value 92.070582
iter 30 value 86.642099
iter 40 value 86.640402
iter 50 value 86.596365
iter 60 value 86.186865
iter 70 value 86.169442
iter 80 value 86.168786
iter 90 value 86.168173
final value 86.167643
converged
Fitting Repeat 2
# weights: 103
initial value 97.520192
iter 10 value 94.054958
iter 20 value 94.052953
final value 94.052951
converged
Fitting Repeat 3
# weights: 103
initial value 104.049441
final value 94.034656
converged
Fitting Repeat 4
# weights: 103
initial value 100.209800
iter 10 value 93.651113
final value 93.641900
converged
Fitting Repeat 5
# weights: 103
initial value 95.564777
final value 94.054488
converged
Fitting Repeat 1
# weights: 305
initial value 109.237252
iter 10 value 94.038019
iter 20 value 94.024134
iter 30 value 94.018088
iter 40 value 94.004323
iter 50 value 93.991952
iter 60 value 93.991744
iter 70 value 93.990882
iter 80 value 93.986876
iter 90 value 93.986391
iter 100 value 93.985839
final value 93.985839
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.861163
iter 10 value 94.079758
iter 20 value 86.700337
iter 30 value 86.495375
iter 40 value 86.477954
iter 50 value 86.176824
iter 60 value 86.166259
iter 70 value 86.165421
iter 80 value 86.165334
final value 86.165307
converged
Fitting Repeat 3
# weights: 305
initial value 108.397722
iter 10 value 94.057793
iter 20 value 94.053048
iter 30 value 87.413902
iter 40 value 86.425894
iter 50 value 86.421735
iter 60 value 86.334827
iter 70 value 86.328227
iter 80 value 86.270212
final value 86.252488
converged
Fitting Repeat 4
# weights: 305
initial value 94.305431
iter 10 value 93.973553
iter 20 value 93.904992
iter 30 value 93.900311
iter 40 value 89.788945
iter 50 value 88.214542
final value 88.212917
converged
Fitting Repeat 5
# weights: 305
initial value 112.276570
iter 10 value 94.038489
iter 20 value 94.034456
final value 94.034181
converged
Fitting Repeat 1
# weights: 507
initial value 101.322880
iter 10 value 94.060963
iter 20 value 94.017087
iter 30 value 91.565641
iter 40 value 88.297603
iter 50 value 88.211632
iter 60 value 88.198319
iter 70 value 88.149187
iter 80 value 87.535230
iter 90 value 86.339852
iter 100 value 84.272701
final value 84.272701
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 101.802733
iter 10 value 94.045223
iter 20 value 94.040441
iter 30 value 93.980376
iter 40 value 92.274918
iter 50 value 91.932449
final value 91.932400
converged
Fitting Repeat 3
# weights: 507
initial value 106.884121
iter 10 value 94.061277
iter 20 value 94.044820
iter 30 value 89.909837
iter 40 value 85.859548
iter 50 value 85.843719
final value 85.843236
converged
Fitting Repeat 4
# weights: 507
initial value 96.429896
iter 10 value 94.050412
iter 20 value 94.023579
iter 30 value 94.017021
iter 30 value 94.017020
iter 30 value 94.017020
final value 94.017020
converged
Fitting Repeat 5
# weights: 507
initial value 106.232867
iter 10 value 94.041014
iter 20 value 93.770056
iter 30 value 92.209946
iter 40 value 91.620649
final value 91.620556
converged
Fitting Repeat 1
# weights: 103
initial value 94.812603
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 95.438785
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 95.211182
iter 10 value 93.196488
iter 20 value 91.960829
final value 91.960589
converged
Fitting Repeat 4
# weights: 103
initial value 110.103515
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 118.833308
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 97.272362
iter 10 value 94.046740
final value 94.046703
converged
Fitting Repeat 2
# weights: 305
initial value 102.505003
final value 94.467391
converged
Fitting Repeat 3
# weights: 305
initial value 111.341134
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 103.433778
final value 94.428839
converged
Fitting Repeat 5
# weights: 305
initial value 106.492301
final value 94.022968
converged
Fitting Repeat 1
# weights: 507
initial value 98.098584
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 97.714381
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 116.275184
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 98.030355
final value 94.423529
converged
Fitting Repeat 5
# weights: 507
initial value 94.696523
iter 10 value 94.046835
iter 20 value 85.743477
iter 30 value 83.824089
iter 40 value 83.011552
final value 83.011502
converged
Fitting Repeat 1
# weights: 103
initial value 96.733101
iter 10 value 94.493769
iter 20 value 92.730430
iter 30 value 91.849851
iter 40 value 88.208414
iter 50 value 85.249298
iter 60 value 84.741430
iter 70 value 83.751566
iter 80 value 83.492747
final value 83.491154
converged
Fitting Repeat 2
# weights: 103
initial value 103.820467
iter 10 value 94.269602
iter 20 value 88.626388
iter 30 value 86.732995
iter 40 value 85.238379
iter 50 value 83.022183
iter 60 value 82.035470
iter 70 value 81.705388
iter 80 value 81.465981
iter 90 value 81.408942
final value 81.408935
converged
Fitting Repeat 3
# weights: 103
initial value 109.823022
iter 10 value 94.492548
iter 20 value 89.755641
iter 30 value 85.716471
iter 40 value 84.351599
iter 50 value 83.977164
iter 60 value 83.772366
iter 70 value 83.505936
iter 80 value 83.491154
iter 80 value 83.491154
iter 80 value 83.491154
final value 83.491154
converged
Fitting Repeat 4
# weights: 103
initial value 105.789183
iter 10 value 93.662389
iter 20 value 87.722099
iter 30 value 83.897059
iter 40 value 83.698123
iter 50 value 83.549073
iter 60 value 83.492630
final value 83.491154
converged
Fitting Repeat 5
# weights: 103
initial value 108.193223
iter 10 value 99.849862
iter 20 value 94.469937
iter 30 value 87.363638
iter 40 value 85.173776
iter 50 value 84.518754
iter 60 value 83.733412
iter 70 value 83.494185
iter 80 value 83.491154
iter 80 value 83.491154
iter 80 value 83.491154
final value 83.491154
converged
Fitting Repeat 1
# weights: 305
initial value 107.785068
iter 10 value 94.568724
iter 20 value 94.176211
iter 30 value 87.536864
iter 40 value 84.366819
iter 50 value 83.531977
iter 60 value 83.461693
iter 70 value 83.458754
iter 80 value 83.422586
iter 90 value 83.228557
iter 100 value 83.194653
final value 83.194653
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 108.511708
iter 10 value 94.495247
iter 20 value 94.269260
iter 30 value 92.457359
iter 40 value 86.736092
iter 50 value 84.646502
iter 60 value 84.159090
iter 70 value 82.835590
iter 80 value 82.428231
iter 90 value 82.027358
iter 100 value 81.869117
final value 81.869117
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 124.300420
iter 10 value 95.022368
iter 20 value 88.715714
iter 30 value 85.539722
iter 40 value 84.936217
iter 50 value 84.414046
iter 60 value 83.911358
iter 70 value 82.118773
iter 80 value 81.113645
iter 90 value 80.496674
iter 100 value 80.098702
final value 80.098702
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 127.054074
iter 10 value 95.846375
iter 20 value 87.375912
iter 30 value 84.910457
iter 40 value 83.360808
iter 50 value 82.164477
iter 60 value 81.075512
iter 70 value 80.936759
iter 80 value 80.450351
iter 90 value 80.318080
iter 100 value 80.291445
final value 80.291445
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.222078
iter 10 value 94.481128
iter 20 value 87.186510
iter 30 value 84.391082
iter 40 value 83.540061
iter 50 value 83.371235
iter 60 value 82.524984
iter 70 value 80.966830
iter 80 value 80.603308
iter 90 value 80.176647
iter 100 value 79.960791
final value 79.960791
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 109.894253
iter 10 value 93.804688
iter 20 value 86.458787
iter 30 value 83.616232
iter 40 value 81.443920
iter 50 value 80.848265
iter 60 value 80.318254
iter 70 value 80.236919
iter 80 value 80.157105
iter 90 value 80.116332
iter 100 value 80.059541
final value 80.059541
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 114.615160
iter 10 value 94.729790
iter 20 value 93.814766
iter 30 value 91.799768
iter 40 value 83.605313
iter 50 value 83.277890
iter 60 value 83.052208
iter 70 value 82.650338
iter 80 value 82.154206
iter 90 value 81.960710
iter 100 value 81.704600
final value 81.704600
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 125.085972
iter 10 value 98.804306
iter 20 value 91.986635
iter 30 value 87.132691
iter 40 value 84.441359
iter 50 value 82.571280
iter 60 value 82.202185
iter 70 value 82.050293
iter 80 value 81.923183
iter 90 value 81.596494
iter 100 value 80.887128
final value 80.887128
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 115.866536
iter 10 value 94.865604
iter 20 value 90.043112
iter 30 value 87.909797
iter 40 value 87.588261
iter 50 value 85.836334
iter 60 value 82.800530
iter 70 value 81.768552
iter 80 value 81.007893
iter 90 value 80.901535
iter 100 value 80.644953
final value 80.644953
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 122.416923
iter 10 value 96.727970
iter 20 value 88.610266
iter 30 value 85.522268
iter 40 value 83.154676
iter 50 value 81.705984
iter 60 value 81.307308
iter 70 value 80.633009
iter 80 value 80.245569
iter 90 value 80.147020
iter 100 value 80.110714
final value 80.110714
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.308628
iter 10 value 94.485720
iter 20 value 94.484261
iter 30 value 94.271983
iter 40 value 89.636930
iter 50 value 89.374463
iter 60 value 89.196540
iter 70 value 87.674361
iter 80 value 86.530204
iter 90 value 86.503272
iter 100 value 86.403831
final value 86.403831
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 96.333062
final value 94.469105
converged
Fitting Repeat 3
# weights: 103
initial value 108.341615
iter 10 value 94.485984
iter 20 value 94.484260
iter 30 value 94.472205
iter 40 value 94.467410
iter 40 value 94.467409
iter 40 value 94.467409
final value 94.467409
converged
Fitting Repeat 4
# weights: 103
initial value 102.988621
final value 94.485828
converged
Fitting Repeat 5
# weights: 103
initial value 97.272775
iter 10 value 94.468969
iter 20 value 94.467575
iter 20 value 94.467575
iter 20 value 94.467575
final value 94.467575
converged
Fitting Repeat 1
# weights: 305
initial value 99.040885
iter 10 value 94.489124
iter 20 value 94.484564
iter 30 value 87.063965
iter 40 value 86.960290
iter 50 value 86.876360
iter 60 value 86.526895
iter 70 value 83.735794
iter 80 value 83.731019
iter 90 value 83.730632
iter 100 value 82.932582
final value 82.932582
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 107.832906
iter 10 value 93.760784
iter 20 value 93.757667
iter 30 value 91.908156
iter 40 value 91.178191
iter 50 value 91.126030
iter 60 value 90.878695
iter 70 value 90.850982
final value 90.850952
converged
Fitting Repeat 3
# weights: 305
initial value 99.300127
iter 10 value 94.352760
iter 20 value 94.343584
iter 30 value 94.341061
iter 40 value 94.338217
iter 50 value 94.335742
iter 60 value 87.146104
iter 70 value 85.129366
iter 80 value 82.723752
iter 90 value 82.722856
iter 100 value 81.791793
final value 81.791793
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 97.985082
iter 10 value 94.489089
iter 20 value 94.482906
iter 30 value 94.429364
iter 40 value 94.404577
iter 50 value 88.251743
iter 60 value 88.214585
iter 70 value 86.617807
iter 80 value 86.545180
final value 86.545179
converged
Fitting Repeat 5
# weights: 305
initial value 98.980664
iter 10 value 94.488550
iter 20 value 94.451152
iter 30 value 94.345857
iter 40 value 93.898965
iter 50 value 85.298409
iter 60 value 84.481822
iter 70 value 84.458756
iter 80 value 84.345799
iter 90 value 84.197443
iter 100 value 83.477390
final value 83.477390
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 95.345291
iter 10 value 94.474777
iter 20 value 94.467625
iter 30 value 90.989550
iter 40 value 87.653513
iter 50 value 84.425611
iter 60 value 83.870621
iter 70 value 81.300719
iter 80 value 80.228247
iter 90 value 79.962977
iter 100 value 79.952675
final value 79.952675
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 113.674428
iter 10 value 94.479789
iter 20 value 94.337314
iter 30 value 92.641778
iter 40 value 84.413382
iter 50 value 83.436615
iter 60 value 82.955249
iter 70 value 82.372727
iter 80 value 82.062934
final value 82.062928
converged
Fitting Repeat 3
# weights: 507
initial value 106.619879
iter 10 value 94.436784
iter 20 value 94.215738
iter 30 value 87.233106
iter 40 value 86.529014
iter 50 value 84.378092
iter 60 value 82.433296
iter 70 value 81.619250
iter 80 value 81.614795
iter 90 value 81.600255
iter 100 value 81.599583
final value 81.599583
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.721030
iter 10 value 94.215277
iter 20 value 84.639638
iter 30 value 83.801325
iter 40 value 83.725146
iter 50 value 83.722176
iter 50 value 83.722175
final value 83.722175
converged
Fitting Repeat 5
# weights: 507
initial value 103.172154
iter 10 value 90.299886
iter 20 value 86.971131
iter 30 value 86.964425
iter 40 value 86.947621
iter 50 value 86.914154
iter 60 value 86.855171
iter 70 value 86.808184
iter 80 value 85.813435
final value 85.812838
converged
Fitting Repeat 1
# weights: 103
initial value 99.292018
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 110.896482
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 95.187555
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 95.984444
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 96.802746
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 104.751801
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 96.607603
iter 10 value 94.296310
iter 10 value 94.296309
iter 10 value 94.296309
final value 94.296309
converged
Fitting Repeat 3
# weights: 305
initial value 101.407515
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 97.894145
iter 10 value 94.063075
iter 20 value 93.935391
final value 93.935239
converged
Fitting Repeat 5
# weights: 305
initial value 116.953689
iter 10 value 94.159629
final value 94.159612
converged
Fitting Repeat 1
# weights: 507
initial value 97.324721
iter 10 value 93.002676
iter 20 value 92.974736
final value 92.974681
converged
Fitting Repeat 2
# weights: 507
initial value 94.779275
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 109.976256
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 95.613126
iter 10 value 94.328277
final value 94.309525
converged
Fitting Repeat 5
# weights: 507
initial value 97.957566
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 101.930557
iter 10 value 94.396631
iter 20 value 89.176029
iter 30 value 88.695456
iter 40 value 85.389391
iter 50 value 85.085931
iter 60 value 84.802928
iter 70 value 84.751059
iter 80 value 84.731048
final value 84.730815
converged
Fitting Repeat 2
# weights: 103
initial value 97.316117
iter 10 value 94.523762
iter 20 value 92.603734
iter 30 value 88.302546
iter 40 value 87.578265
iter 50 value 85.006124
iter 60 value 84.804037
iter 70 value 84.735264
iter 80 value 84.409816
iter 90 value 84.300091
iter 100 value 84.296585
final value 84.296585
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 98.674264
iter 10 value 94.492333
iter 20 value 94.211210
iter 30 value 90.329903
iter 40 value 82.512154
iter 50 value 81.725083
iter 60 value 81.394233
iter 70 value 81.062033
iter 80 value 80.927085
final value 80.924052
converged
Fitting Repeat 4
# weights: 103
initial value 109.139012
iter 10 value 94.690869
iter 20 value 94.483961
iter 30 value 85.505585
iter 40 value 84.826292
iter 50 value 84.527231
iter 60 value 84.352894
iter 70 value 84.342052
iter 80 value 84.297047
final value 84.296557
converged
Fitting Repeat 5
# weights: 103
initial value 98.671723
iter 10 value 94.486433
iter 20 value 89.591481
iter 30 value 85.074182
iter 40 value 84.838879
iter 50 value 84.799407
iter 60 value 84.775904
iter 70 value 84.740633
final value 84.730815
converged
Fitting Repeat 1
# weights: 305
initial value 107.161768
iter 10 value 94.571084
iter 20 value 93.185207
iter 30 value 92.818751
iter 40 value 91.319467
iter 50 value 84.967001
iter 60 value 84.754029
iter 70 value 84.475280
iter 80 value 83.336932
iter 90 value 82.811558
iter 100 value 82.540927
final value 82.540927
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 105.640574
iter 10 value 94.485481
iter 20 value 94.293851
iter 30 value 88.806602
iter 40 value 85.458179
iter 50 value 82.906923
iter 60 value 81.408781
iter 70 value 80.917884
iter 80 value 80.348869
iter 90 value 79.961758
iter 100 value 79.705951
final value 79.705951
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.233318
iter 10 value 94.631136
iter 20 value 93.991599
iter 30 value 87.897976
iter 40 value 87.847749
iter 50 value 86.407719
iter 60 value 81.812352
iter 70 value 81.155472
iter 80 value 80.669574
iter 90 value 80.317669
iter 100 value 79.933037
final value 79.933037
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 108.310221
iter 10 value 94.914109
iter 20 value 94.447331
iter 30 value 93.574438
iter 40 value 88.375290
iter 50 value 88.100243
iter 60 value 87.956979
iter 70 value 87.828611
iter 80 value 84.120978
iter 90 value 82.642874
iter 100 value 80.704409
final value 80.704409
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.955280
iter 10 value 94.336162
iter 20 value 88.480542
iter 30 value 88.067128
iter 40 value 85.953620
iter 50 value 85.785037
iter 60 value 85.722909
iter 70 value 85.435414
iter 80 value 82.454045
iter 90 value 80.803862
iter 100 value 80.562325
final value 80.562325
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 124.222176
iter 10 value 95.863869
iter 20 value 92.607023
iter 30 value 92.166653
iter 40 value 92.106964
iter 50 value 90.061623
iter 60 value 87.427272
iter 70 value 83.717980
iter 80 value 81.888297
iter 90 value 80.508998
iter 100 value 80.128297
final value 80.128297
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 129.537710
iter 10 value 94.101853
iter 20 value 87.125237
iter 30 value 82.908789
iter 40 value 82.383920
iter 50 value 81.422233
iter 60 value 80.398068
iter 70 value 79.466335
iter 80 value 79.241614
iter 90 value 79.224179
iter 100 value 79.164710
final value 79.164710
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 107.005665
iter 10 value 96.537733
iter 20 value 93.596898
iter 30 value 89.068220
iter 40 value 88.277317
iter 50 value 87.802223
iter 60 value 86.404980
iter 70 value 83.516475
iter 80 value 81.654079
iter 90 value 81.269324
iter 100 value 80.989116
final value 80.989116
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 114.116209
iter 10 value 94.617389
iter 20 value 88.379447
iter 30 value 84.862043
iter 40 value 83.259432
iter 50 value 82.727372
iter 60 value 81.862676
iter 70 value 81.005949
iter 80 value 80.562134
iter 90 value 80.171840
iter 100 value 79.952408
final value 79.952408
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 139.344747
iter 10 value 94.549800
iter 20 value 93.613336
iter 30 value 88.856002
iter 40 value 88.690595
iter 50 value 88.259014
iter 60 value 86.732591
iter 70 value 84.692809
iter 80 value 81.801777
iter 90 value 80.461174
iter 100 value 80.270301
final value 80.270301
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 111.371677
final value 94.485980
converged
Fitting Repeat 2
# weights: 103
initial value 95.237518
final value 94.485772
converged
Fitting Repeat 3
# weights: 103
initial value 100.700522
final value 94.486019
converged
Fitting Repeat 4
# weights: 103
initial value 102.342411
final value 94.485922
converged
Fitting Repeat 5
# weights: 103
initial value 95.671413
final value 94.485960
converged
Fitting Repeat 1
# weights: 305
initial value 119.566582
iter 10 value 94.488930
iter 20 value 94.484456
final value 94.484441
converged
Fitting Repeat 2
# weights: 305
initial value 111.751194
iter 10 value 93.815215
iter 20 value 93.649176
iter 30 value 93.645577
iter 40 value 93.629233
final value 93.629217
converged
Fitting Repeat 3
# weights: 305
initial value 96.226221
iter 10 value 94.488619
iter 20 value 94.390518
iter 30 value 89.413243
final value 89.413236
converged
Fitting Repeat 4
# weights: 305
initial value 97.371319
iter 10 value 94.149467
iter 20 value 94.117253
iter 30 value 91.255766
iter 40 value 91.183765
iter 50 value 88.269340
iter 60 value 88.260617
iter 60 value 88.260617
final value 88.260617
converged
Fitting Repeat 5
# weights: 305
initial value 114.228637
iter 10 value 93.949808
iter 20 value 93.912317
iter 30 value 93.911216
iter 40 value 93.910225
iter 50 value 93.889416
iter 60 value 93.815538
iter 70 value 93.717652
iter 80 value 93.711627
iter 90 value 93.537858
iter 100 value 93.520332
final value 93.520332
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 107.299145
iter 10 value 94.492964
iter 20 value 94.482954
iter 30 value 87.697849
iter 40 value 87.165433
final value 87.153306
converged
Fitting Repeat 2
# weights: 507
initial value 97.125064
iter 10 value 94.152799
iter 20 value 94.146424
iter 30 value 94.091174
iter 40 value 94.089563
final value 94.089007
converged
Fitting Repeat 3
# weights: 507
initial value 95.656042
iter 10 value 94.362456
iter 20 value 93.942427
iter 30 value 87.665757
iter 40 value 87.366002
iter 50 value 84.883962
iter 60 value 82.701513
iter 70 value 82.700242
iter 80 value 82.175933
iter 90 value 81.525828
iter 100 value 81.525431
final value 81.525431
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 112.956173
iter 10 value 94.362690
iter 20 value 94.356800
iter 30 value 94.227887
iter 40 value 94.135165
iter 50 value 94.134255
iter 60 value 94.132803
iter 70 value 93.748417
iter 80 value 89.033548
iter 90 value 82.955761
iter 100 value 79.896887
final value 79.896887
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 95.752259
iter 10 value 94.486948
iter 20 value 85.935691
iter 30 value 85.166963
iter 40 value 83.915800
iter 50 value 83.906750
iter 60 value 83.373236
iter 70 value 81.682267
iter 80 value 81.486761
final value 81.484872
converged
Fitting Repeat 1
# weights: 103
initial value 95.899742
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 107.910570
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 108.088956
iter 10 value 92.295812
iter 20 value 92.281095
final value 92.281082
converged
Fitting Repeat 4
# weights: 103
initial value 94.323489
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 107.789336
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 103.289577
final value 92.649123
converged
Fitting Repeat 2
# weights: 305
initial value 106.527691
iter 10 value 92.334642
iter 20 value 92.281128
final value 92.281082
converged
Fitting Repeat 3
# weights: 305
initial value 97.547661
iter 10 value 92.289041
iter 20 value 92.281088
final value 92.281082
converged
Fitting Repeat 4
# weights: 305
initial value 107.532853
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 99.230639
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 111.349856
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 97.914883
iter 10 value 92.657913
iter 20 value 92.649131
final value 92.649123
converged
Fitting Repeat 3
# weights: 507
initial value 112.775768
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 108.274196
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 97.754872
iter 10 value 94.028036
final value 94.027933
converged
Fitting Repeat 1
# weights: 103
initial value 105.965016
iter 10 value 94.056672
iter 20 value 93.134599
iter 30 value 89.382893
iter 40 value 84.911157
iter 50 value 83.059955
iter 60 value 81.726547
iter 70 value 81.557956
iter 80 value 81.390025
iter 90 value 81.320431
final value 81.319140
converged
Fitting Repeat 2
# weights: 103
initial value 98.333200
iter 10 value 94.056392
iter 20 value 84.094920
iter 30 value 82.341320
iter 40 value 81.810648
iter 50 value 81.690239
final value 81.688123
converged
Fitting Repeat 3
# weights: 103
initial value 112.859225
iter 10 value 100.518923
iter 20 value 94.059192
iter 30 value 88.421291
iter 40 value 85.247390
iter 50 value 84.729271
iter 60 value 84.172578
iter 70 value 84.006293
iter 80 value 83.920585
iter 90 value 81.458523
iter 100 value 80.694251
final value 80.694251
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 101.448126
iter 10 value 94.042214
iter 20 value 87.669082
iter 30 value 82.672232
iter 40 value 81.849919
iter 50 value 81.006280
iter 60 value 80.350045
iter 70 value 80.057024
iter 80 value 79.845188
iter 90 value 79.792107
iter 100 value 79.115867
final value 79.115867
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 113.173695
iter 10 value 93.980119
iter 20 value 90.883004
iter 30 value 83.940405
iter 40 value 83.579871
iter 50 value 81.914736
iter 60 value 81.698265
final value 81.689404
converged
Fitting Repeat 1
# weights: 305
initial value 103.657160
iter 10 value 87.507677
iter 20 value 83.641592
iter 30 value 82.386249
iter 40 value 81.946636
iter 50 value 79.772205
iter 60 value 79.067241
iter 70 value 78.907031
iter 80 value 78.746620
iter 90 value 78.681377
iter 100 value 78.591069
final value 78.591069
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 110.014686
iter 10 value 94.225726
iter 20 value 93.291716
iter 30 value 83.177970
iter 40 value 82.078901
iter 50 value 81.678355
iter 60 value 81.408978
iter 70 value 81.321475
iter 80 value 80.960763
iter 90 value 80.247541
iter 100 value 80.213633
final value 80.213633
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 107.890834
iter 10 value 94.104296
iter 20 value 92.581986
iter 30 value 85.540822
iter 40 value 82.731844
iter 50 value 80.743847
iter 60 value 80.004091
iter 70 value 79.440560
iter 80 value 78.819347
iter 90 value 78.510635
iter 100 value 78.209687
final value 78.209687
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.593603
iter 10 value 92.908156
iter 20 value 91.959668
iter 30 value 89.713993
iter 40 value 85.521778
iter 50 value 84.737179
iter 60 value 81.793398
iter 70 value 81.122634
iter 80 value 80.899639
iter 90 value 80.562290
iter 100 value 80.252540
final value 80.252540
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.689412
iter 10 value 94.051395
iter 20 value 92.949701
iter 30 value 92.770043
iter 40 value 84.665270
iter 50 value 83.120484
iter 60 value 82.361476
iter 70 value 80.882222
iter 80 value 78.848114
iter 90 value 77.351969
iter 100 value 77.150999
final value 77.150999
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 114.304655
iter 10 value 93.277408
iter 20 value 91.651424
iter 30 value 88.063666
iter 40 value 82.924958
iter 50 value 80.112561
iter 60 value 78.181141
iter 70 value 77.010876
iter 80 value 76.670597
iter 90 value 76.452696
iter 100 value 76.273314
final value 76.273314
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 128.370199
iter 10 value 86.350284
iter 20 value 83.880678
iter 30 value 83.504327
iter 40 value 83.230322
iter 50 value 82.651541
iter 60 value 80.572298
iter 70 value 79.655786
iter 80 value 79.418590
iter 90 value 79.230670
iter 100 value 79.052029
final value 79.052029
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 115.926242
iter 10 value 93.047723
iter 20 value 91.210787
iter 30 value 82.158563
iter 40 value 80.038762
iter 50 value 79.175832
iter 60 value 78.407437
iter 70 value 77.858724
iter 80 value 77.334742
iter 90 value 76.726210
iter 100 value 76.352521
final value 76.352521
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 109.518946
iter 10 value 94.556993
iter 20 value 93.596868
iter 30 value 92.648046
iter 40 value 89.348588
iter 50 value 85.964396
iter 60 value 85.309634
iter 70 value 80.802256
iter 80 value 80.423050
iter 90 value 80.033740
iter 100 value 79.401681
final value 79.401681
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 122.455131
iter 10 value 93.810595
iter 20 value 92.940469
iter 30 value 86.131008
iter 40 value 85.807505
iter 50 value 81.447919
iter 60 value 79.196573
iter 70 value 77.651320
iter 80 value 77.011744
iter 90 value 76.904424
iter 100 value 76.794028
final value 76.794028
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.587524
final value 94.054301
converged
Fitting Repeat 2
# weights: 103
initial value 95.851141
final value 94.054876
converged
Fitting Repeat 3
# weights: 103
initial value 101.063437
final value 94.054633
converged
Fitting Repeat 4
# weights: 103
initial value 94.558286
iter 10 value 94.054323
iter 20 value 93.319229
iter 30 value 92.290349
final value 92.290345
converged
Fitting Repeat 5
# weights: 103
initial value 94.143152
final value 94.054636
converged
Fitting Repeat 1
# weights: 305
initial value 106.329912
iter 10 value 94.057654
iter 20 value 94.035842
iter 30 value 83.298915
iter 40 value 83.144667
iter 50 value 83.144537
iter 60 value 82.545612
iter 70 value 82.326647
final value 82.324823
converged
Fitting Repeat 2
# weights: 305
initial value 97.563717
iter 10 value 94.057793
iter 20 value 93.643841
iter 30 value 86.036196
iter 40 value 82.451037
iter 50 value 82.331038
iter 60 value 81.525303
iter 70 value 81.248151
iter 80 value 81.248032
iter 90 value 81.247357
final value 81.247189
converged
Fitting Repeat 3
# weights: 305
initial value 99.418519
iter 10 value 92.898363
iter 20 value 91.885583
iter 30 value 91.778484
iter 40 value 87.734710
iter 50 value 83.977362
final value 83.977355
converged
Fitting Repeat 4
# weights: 305
initial value 96.693642
iter 10 value 94.054227
iter 20 value 92.796204
iter 30 value 91.904808
final value 91.860530
converged
Fitting Repeat 5
# weights: 305
initial value 100.302131
iter 10 value 94.057635
iter 20 value 83.067113
iter 30 value 82.326814
iter 40 value 82.326601
iter 50 value 82.325393
iter 60 value 82.325267
final value 82.324971
converged
Fitting Repeat 1
# weights: 507
initial value 103.333088
iter 10 value 92.305416
iter 20 value 92.294661
iter 30 value 92.164983
iter 40 value 88.988282
iter 50 value 83.160797
iter 60 value 82.126531
iter 70 value 82.093897
iter 80 value 81.637446
iter 90 value 81.465689
iter 100 value 81.463618
final value 81.463618
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 114.891271
iter 10 value 92.319263
iter 20 value 90.109008
iter 30 value 83.935496
iter 40 value 83.843025
iter 50 value 83.834358
iter 60 value 83.569352
iter 70 value 83.409878
iter 80 value 82.701210
iter 90 value 82.556546
iter 100 value 82.555516
final value 82.555516
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 102.052306
iter 10 value 92.982223
iter 20 value 92.944169
iter 30 value 92.861152
iter 40 value 91.206874
iter 50 value 82.046713
iter 60 value 81.560174
iter 70 value 81.556719
iter 80 value 81.362759
iter 90 value 78.381624
iter 100 value 77.619246
final value 77.619246
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 93.914625
iter 10 value 85.367399
iter 20 value 85.155972
iter 30 value 85.134546
iter 40 value 82.444919
iter 50 value 79.573299
iter 60 value 79.455586
iter 70 value 79.340764
iter 80 value 79.267863
iter 90 value 79.264509
iter 100 value 79.263445
final value 79.263445
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.378048
iter 10 value 92.296595
iter 20 value 92.292592
iter 30 value 92.285286
iter 40 value 89.626425
iter 50 value 80.133923
iter 60 value 78.153535
iter 70 value 76.186581
iter 80 value 75.098761
iter 90 value 74.609166
iter 100 value 74.415925
final value 74.415925
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 142.363010
iter 10 value 117.768339
iter 20 value 117.765704
iter 30 value 117.760219
iter 40 value 117.534694
iter 50 value 117.502915
iter 60 value 117.502369
iter 70 value 117.500359
iter 80 value 117.499705
iter 90 value 117.499543
final value 117.499527
converged
Fitting Repeat 2
# weights: 507
initial value 131.196938
iter 10 value 111.027507
iter 20 value 106.715486
iter 30 value 105.148630
iter 40 value 105.071739
iter 50 value 105.060519
iter 60 value 104.827540
iter 70 value 104.810494
iter 80 value 104.791453
iter 90 value 104.783432
iter 100 value 104.738154
final value 104.738154
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 120.633652
iter 10 value 117.738528
iter 20 value 115.851760
iter 30 value 108.455134
iter 40 value 104.381154
iter 50 value 104.315071
iter 60 value 103.730643
iter 70 value 103.383340
iter 80 value 103.382808
iter 90 value 103.382069
final value 103.382014
converged
Fitting Repeat 4
# weights: 507
initial value 144.404812
iter 10 value 117.783780
iter 20 value 117.773707
iter 30 value 108.407188
iter 40 value 103.852130
iter 50 value 103.595879
iter 60 value 103.493166
iter 70 value 103.203737
iter 80 value 103.173442
iter 90 value 103.080367
iter 100 value 103.027925
final value 103.027925
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 118.900690
iter 10 value 117.874266
iter 20 value 117.866677
iter 30 value 117.623066
iter 40 value 116.449800
iter 50 value 112.668715
iter 60 value 112.539300
iter 70 value 112.221500
final value 112.079633
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Mon May 4 00:48:08 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
40.913 1.007 91.876
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 33.855 | 0.567 | 34.486 | |
| FreqInteractors | 0.460 | 0.033 | 0.494 | |
| calculateAAC | 0.035 | 0.000 | 0.035 | |
| calculateAutocor | 0.285 | 0.013 | 0.299 | |
| calculateCTDC | 0.078 | 0.000 | 0.078 | |
| calculateCTDD | 0.483 | 0.003 | 0.486 | |
| calculateCTDT | 0.133 | 0.000 | 0.134 | |
| calculateCTriad | 0.389 | 0.002 | 0.390 | |
| calculateDC | 0.085 | 0.001 | 0.086 | |
| calculateF | 0.298 | 0.003 | 0.301 | |
| calculateKSAAP | 0.096 | 0.001 | 0.096 | |
| calculateQD_Sm | 1.771 | 0.010 | 1.781 | |
| calculateTC | 1.526 | 0.028 | 1.555 | |
| calculateTC_Sm | 0.277 | 0.000 | 0.277 | |
| corr_plot | 34.779 | 0.300 | 35.129 | |
| enrichfindP | 0.591 | 0.033 | 8.211 | |
| enrichfind_hp | 0.064 | 0.001 | 1.920 | |
| enrichplot | 0.522 | 0.000 | 0.522 | |
| filter_missing_values | 0.001 | 0.000 | 0.001 | |
| getFASTA | 0.524 | 0.025 | 3.917 | |
| getHPI | 0.001 | 0.000 | 0.001 | |
| get_negativePPI | 0.002 | 0.000 | 0.002 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.001 | 0.000 | 0.002 | |
| plotPPI | 0.101 | 0.001 | 0.102 | |
| pred_ensembel | 13.024 | 0.096 | 11.862 | |
| var_imp | 34.075 | 0.471 | 34.574 | |