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This page was generated on 2025-08-16 12:06 -0400 (Sat, 16 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4818
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4596
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4538
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4535
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 951/2317HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HEM 1.81.0  (landing page)
HyungJun Cho
Snapshot Date: 2025-08-15 13:45 -0400 (Fri, 15 Aug 2025)
git_url: https://git.bioconductor.org/packages/HEM
git_branch: devel
git_last_commit: 82d5f36
git_last_commit_date: 2025-04-15 09:34:45 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  ERROR    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


BUILD results for HEM on kjohnson3

To the developers/maintainers of the HEM package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HEM.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: HEM
Version: 1.81.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HEM
StartedAt: 2025-08-15 16:37:21 -0400 (Fri, 15 Aug 2025)
EndedAt: 2025-08-15 16:37:22 -0400 (Fri, 15 Aug 2025)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HEM
###
##############################################################################
##############################################################################


* checking for file ‘HEM/DESCRIPTION’ ... OK
* preparing ‘HEM’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘HEM’ ...
** this is package ‘HEM’ version ‘1.81.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c hem.c -o hem.o
In file included from hem.c:17:
./random4f.h:126:18: error: unknown type name 'alpha'
double gammadist(alpha)
                 ^
./random4f.h:126:24: error: expected ';' after top level declarator
double gammadist(alpha)
                       ^
                       ;
./random4f.h:128:1: error: expected identifier or '('
{ double u0,x,y;
^
hem.c:980:44: warning: variable 'raccept' set but not used [-Wunused-but-set-variable]
        double temp, temp2, MHratio, U, old, new, raccept;
                                                  ^
hem.c:1079:44: warning: variable 'raccept' set but not used [-Wunused-but-set-variable]
        double temp, temp2, MHratio, U, old, new, raccept;
                                                  ^
hem.c:1390:12: warning: variable 'k' set but not used [-Wunused-but-set-variable]
        int i, j, k, m, n;
                  ^
hem.c:1593:16: warning: variable 'l' set but not used [-Wunused-but-set-variable]
  int i, j, k, l;
               ^
4 warnings and 3 errors generated.
make: *** [hem.o] Error 1
ERROR: compilation failed for package ‘HEM’
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpQ02xkF/Rinstfe31e311d31/HEM’
      -----------------------------------
ERROR: package installation failed