Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-08-16 12:06 -0400 (Sat, 16 Aug 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4596 |
kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4538 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4535 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 951/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HEM 1.81.0 (landing page) HyungJun Cho
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the HEM package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HEM.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HEM |
Version: 1.81.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HEM |
StartedAt: 2025-08-15 16:37:21 -0400 (Fri, 15 Aug 2025) |
EndedAt: 2025-08-15 16:37:22 -0400 (Fri, 15 Aug 2025) |
EllapsedTime: 1.0 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HEM ### ############################################################################## ############################################################################## * checking for file ‘HEM/DESCRIPTION’ ... OK * preparing ‘HEM’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘HEM’ ... ** this is package ‘HEM’ version ‘1.81.0’ ** using staged installation ** libs using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’ using SDK: ‘MacOSX11.3.sdk’ clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c hem.c -o hem.o In file included from hem.c:17: ./random4f.h:126:18: error: unknown type name 'alpha' double gammadist(alpha) ^ ./random4f.h:126:24: error: expected ';' after top level declarator double gammadist(alpha) ^ ; ./random4f.h:128:1: error: expected identifier or '(' { double u0,x,y; ^ hem.c:980:44: warning: variable 'raccept' set but not used [-Wunused-but-set-variable] double temp, temp2, MHratio, U, old, new, raccept; ^ hem.c:1079:44: warning: variable 'raccept' set but not used [-Wunused-but-set-variable] double temp, temp2, MHratio, U, old, new, raccept; ^ hem.c:1390:12: warning: variable 'k' set but not used [-Wunused-but-set-variable] int i, j, k, m, n; ^ hem.c:1593:16: warning: variable 'l' set but not used [-Wunused-but-set-variable] int i, j, k, l; ^ 4 warnings and 3 errors generated. make: *** [hem.o] Error 1 ERROR: compilation failed for package ‘HEM’ * removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpQ02xkF/Rinstfe31e311d31/HEM’ ----------------------------------- ERROR: package installation failed