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This page was generated on 2025-09-27 12:07 -0400 (Sat, 27 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4832
lconwaymacOS 12.7.1 Montereyx86_644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4620
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4565
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4563
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 845/2334HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomicSuperSignature 1.17.0  (landing page)
Sehyun Oh
Snapshot Date: 2025-09-26 13:45 -0400 (Fri, 26 Sep 2025)
git_url: https://git.bioconductor.org/packages/GenomicSuperSignature
git_branch: devel
git_last_commit: 5d18ff3
git_last_commit_date: 2025-05-15 23:16:21 -0400 (Thu, 15 May 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped


BUILD results for GenomicSuperSignature on taishan

To the developers/maintainers of the GenomicSuperSignature package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GenomicSuperSignature.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: GenomicSuperSignature
Version: 1.17.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GenomicSuperSignature
StartedAt: 2025-09-26 00:17:31 -0000 (Fri, 26 Sep 2025)
EndedAt: 2025-09-26 00:33:02 -0000 (Fri, 26 Sep 2025)
EllapsedTime: 931.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GenomicSuperSignature
###
##############################################################################
##############################################################################


* checking for file ‘GenomicSuperSignature/DESCRIPTION’ ... OK
* preparing ‘GenomicSuperSignature’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Contents.Rmd’ using rmarkdown
Could not fetch https://raw.githubusercontent.com/shbrief/GenomicSuperSignaturePaper/master/inst/images/GSig_RAVmodel.png
HttpExceptionRequest Request {
  host                 = "raw.githubusercontent.com"
  port                 = 443
  secure               = True
  requestHeaders       = []
  path                 = "/shbrief/GenomicSuperSignaturePaper/master/inst/images/GSig_RAVmodel.png"
  queryString          = ""
  method               = "GET"
  proxy                = Nothing
  rawBody              = False
  redirectCount        = 10
  responseTimeout      = ResponseTimeoutDefault
  requestVersion       = HTTP/1.1
  proxySecureMode      = ProxySecureWithConnect
}
 ConnectionTimeout
Error: processing vignette 'Contents.Rmd' failed with diagnostics:
pandoc document conversion failed with error 61
--- failed re-building ‘Contents.Rmd’

--- re-building ‘Quickstart.Rmd’ using rmarkdown
--- finished re-building ‘Quickstart.Rmd’

SUMMARY: processing the following file failed:
  ‘Contents.Rmd’

Error: Vignette re-building failed.
Execution halted