Sean Davis
| Snapshot Date: 2025-01-23 13:40 -0500 (Thu, 23 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/GenomicDataCommons |
| git_branch: devel |
| git_last_commit: b90f2c6 |
| git_last_commit_date: 2024-10-29 10:18:33 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-01-24 11:41 -0500 (Fri, 24 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4609 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4393 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 3839 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 3835 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4408 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 816/2286 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GenomicDataCommons 1.31.0 (landing page) Sean Davis
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the GenomicDataCommons package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GenomicDataCommons.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: GenomicDataCommons |
| Version: 1.31.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GenomicDataCommons |
| StartedAt: 2025-01-23 16:20:20 -0500 (Thu, 23 Jan 2025) |
| EndedAt: 2025-01-23 16:21:27 -0500 (Thu, 23 Jan 2025) |
| EllapsedTime: 67.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GenomicDataCommons ### ############################################################################## ############################################################################## * checking for file ‘GenomicDataCommons/DESCRIPTION’ ... OK * preparing ‘GenomicDataCommons’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘overview.Rmd’ using rmarkdown 2025-01-23 16:20:49.590 R[32009:980472201] XType: com.apple.fonts is not accessible. 2025-01-23 16:20:49.590 R[32009:980472201] XType: XTFontStaticRegistry is enabled. --- finished re-building ‘overview.Rmd’ --- re-building ‘questions-and-answers.Rmd’ using rmarkdown --- finished re-building ‘questions-and-answers.Rmd’ --- re-building ‘somatic_mutations.Rmd’ using rmarkdown Quitting from lines 121-123 [unnamed-chunk-13] (somatic_mutations.Rmd) Error: processing vignette 'somatic_mutations.Rmd' failed with diagnostics: there is no package called 'maftools' --- failed re-building ‘somatic_mutations.Rmd’ SUMMARY: processing the following file failed: ‘somatic_mutations.Rmd’ Error: Vignette re-building failed. Execution halted