Mathieu Emily
| Snapshot Date: 2024-12-23 13:40 -0500 (Mon, 23 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/GeneGeneInteR |
| git_branch: devel |
| git_last_commit: bbad5d1 |
| git_last_commit_date: 2024-10-29 10:12:42 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-12-24 11:40 -0500 (Tue, 24 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4373 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 790/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GeneGeneInteR 1.33.0 (landing page) Mathieu Emily
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the GeneGeneInteR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeneGeneInteR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: GeneGeneInteR |
| Version: 1.33.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL GeneGeneInteR |
| StartedAt: 2024-12-23 15:43:16 -0500 (Mon, 23 Dec 2024) |
| EndedAt: 2024-12-23 15:43:17 -0500 (Mon, 23 Dec 2024) |
| EllapsedTime: 1.0 seconds |
| RetCode: 1 |
| Status: ERROR |
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###
### Running command:
###
### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL GeneGeneInteR
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘GeneGeneInteR’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -DR_NO_REMAP -c chclust.cpp -o chclust.o
In file included from chclust.cpp:7:
chclust.cpp: In function ‘SEXPREC* chclust_c(SEXP, SEXP)’:
chclust.cpp:43:29: error: ‘allocVector’ was not declared in this scope; did you mean ‘Rf_allocVector’?
43 | PROTECT(eMessage = allocVector(STRSXP, 1));
| ^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
388 | #define PROTECT(s) Rf_protect(s)
| ^
chclust.cpp:44:38: error: ‘mkChar’ was not declared in this scope
44 | SET_STRING_ELT(eMessage, 0, mkChar("Error in Conslink C++ code"));
| ^~~~~~
chclust.cpp:50:29: error: ‘allocVector’ was not declared in this scope; did you mean ‘Rf_allocVector’?
50 | PROTECT(eMessage = allocVector(STRSXP, 1));
| ^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
388 | #define PROTECT(s) Rf_protect(s)
| ^
chclust.cpp:51:38: error: ‘mkChar’ was not declared in this scope
51 | SET_STRING_ELT(eMessage, 0, mkChar("Error in ConISS C++ code"));
| ^~~~~~
chclust.cpp:56:26: error: ‘allocVector’ was not declared in this scope; did you mean ‘Rf_allocVector’?
56 | PROTECT(eMessage = allocVector(STRSXP, 1));
| ^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
388 | #define PROTECT(s) Rf_protect(s)
| ^
chclust.cpp:57:35: error: ‘mkChar’ was not declared in this scope
57 | SET_STRING_ELT(eMessage, 0, mkChar("Unknown clustering method"));
| ^~~~~~
chclust.cpp:61:20: error: ‘allocVector’ was not declared in this scope; did you mean ‘Rf_allocVector’?
61 | PROTECT(sDend = allocVector(REALSXP, nr-1));
| ^~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
388 | #define PROTECT(s) Rf_protect(s)
| ^
make: *** [/home/biocbuild/bbs-3.21-bioc/R/etc/Makeconf:202: chclust.o] Error 1
ERROR: compilation failed for package ‘GeneGeneInteR’
* removing ‘/home/biocbuild/bbs-3.21-bioc/R/site-library/GeneGeneInteR’
* restoring previous ‘/home/biocbuild/bbs-3.21-bioc/R/site-library/GeneGeneInteR’