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This page was generated on 2024-11-27 11:43 -0500 (Wed, 27 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4748
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4459
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4396
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4110
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 826/2272HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenProSeq 1.11.0  (landing page)
Dongmin Jung
Snapshot Date: 2024-11-26 13:40 -0500 (Tue, 26 Nov 2024)
git_url: https://git.bioconductor.org/packages/GenProSeq
git_branch: devel
git_last_commit: 45b803f
git_last_commit_date: 2024-10-29 11:09:45 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for GenProSeq on kjohnson3

To the developers/maintainers of the GenProSeq package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GenProSeq.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: GenProSeq
Version: 1.11.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GenProSeq
StartedAt: 2024-11-26 16:22:47 -0500 (Tue, 26 Nov 2024)
EndedAt: 2024-11-26 16:22:58 -0500 (Tue, 26 Nov 2024)
EllapsedTime: 11.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GenProSeq
###
##############################################################################
##############################################################################


* checking for file ‘GenProSeq/DESCRIPTION’ ... OK
* preparing ‘GenProSeq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GenProSeq.Rmd’ using rmarkdown
/Users/biocbuild/Library/Python/3.9/lib/python/site-packages/urllib3/__init__.py:35: NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: https://github.com/urllib3/urllib3/issues/3020
  warnings.warn(
/Users/biocbuild/Library/Python/3.9/lib/python/site-packages/keras/src/layers/reshaping/flatten.py:37: UserWarning: Do not pass an `input_shape`/`input_dim` argument to a layer. When using Sequential models, prefer using an `Input(shape)` object as the first layer in the model instead.
  super().__init__(**kwargs)

Quitting from lines 55-81 [unnamed-chunk-1] (GenProSeq.Rmd)
Error: processing vignette 'GenProSeq.Rmd' failed with diagnostics:
object 'combined' not found
--- failed re-building ‘GenProSeq.Rmd’

SUMMARY: processing the following file failed:
  ‘GenProSeq.Rmd’

Error: Vignette re-building failed.
Execution halted