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This page was generated on 2025-02-06 11:42 -0500 (Thu, 06 Feb 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 4719
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" 4480
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" 4491
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 4444
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 641/2295HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EnhancedVolcano 1.25.0  (landing page)
Kevin Blighe
Snapshot Date: 2025-02-05 13:48 -0500 (Wed, 05 Feb 2025)
git_url: https://git.bioconductor.org/packages/EnhancedVolcano
git_branch: devel
git_last_commit: 88a8e6a
git_last_commit_date: 2024-10-29 10:30:46 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for EnhancedVolcano on lconway

To the developers/maintainers of the EnhancedVolcano package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EnhancedVolcano.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: EnhancedVolcano
Version: 1.25.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data EnhancedVolcano
StartedAt: 2025-02-05 16:35:48 -0500 (Wed, 05 Feb 2025)
EndedAt: 2025-02-05 16:37:01 -0500 (Wed, 05 Feb 2025)
EllapsedTime: 73.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data EnhancedVolcano
###
##############################################################################
##############################################################################


* checking for file ‘EnhancedVolcano/DESCRIPTION’ ... OK
* preparing ‘EnhancedVolcano’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘EnhancedVolcano.Rmd’ using rmarkdown
2025-02-05 16:36:30.510 R[58345:96953632] XType: com.apple.fonts is not accessible.
2025-02-05 16:36:30.511 R[58345:96953632] XType: XTFontStaticRegistry is enabled.
Warning: ggrepel: 11 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 6 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 8 unlabeled data points (too many overlaps). Consider increasing max.overlaps

Quitting from lines 678-722 [ex14] (EnhancedVolcano.Rmd)
Error: processing vignette 'EnhancedVolcano.Rmd' failed with diagnostics:
there is no package called 'pasilla'
--- failed re-building ‘EnhancedVolcano.Rmd’

SUMMARY: processing the following file failed:
  ‘EnhancedVolcano.Rmd’

Error: Vignette re-building failed.
Execution halted