| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-08-07 12:05 -0400 (Thu, 07 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4815 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4550 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4592 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4534 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 689/2315 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| EWCE 1.17.0 (landing page) Alan Murphy
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the EWCE package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EWCE.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: EWCE |
| Version: 1.17.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 EWCE |
| StartedAt: 2025-08-06 17:19:41 -0400 (Wed, 06 Aug 2025) |
| EndedAt: 2025-08-06 17:20:56 -0400 (Wed, 06 Aug 2025) |
| EllapsedTime: 74.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 EWCE
###
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* checking for file ‘EWCE/DESCRIPTION’ ... OK
* preparing ‘EWCE’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘EWCE.Rmd’ using rmarkdown
Quitting from EWCE.Rmd:57-59 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! failed to load resource
name: EH5376
title: ctd
reason: C stack usage 7976388 is too close to the limit
---
Backtrace:
▆
1. └─ewceData::ctd()
2. ├─eh[["EH5376"]]
3. └─eh[["EH5376"]]
4. └─ExperimentHub (local) .local(x, i, j = j, ...)
5. ├─methods::callNextMethod(...)
6. │ └─base::eval(call, callEnv)
7. │ └─base::eval(call, callEnv)
8. └─AnnotationHub (local) .nextMethod(...)
9. └─AnnotationHub (local) .local(x, i, j = j, ...)
10. └─AnnotationHub:::.Hub_get1(...)
11. └─base::tryCatch(...)
12. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
13. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
14. └─value[[3L]](cond)
15. └─base::tryCatch(...)
16. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
17. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
18. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'EWCE.Rmd' failed with diagnostics:
failed to load resource
name: EH5376
title: ctd
reason: C stack usage 7976388 is too close to the limit
--- failed re-building ‘EWCE.Rmd’
--- re-building ‘extended.Rmd’ using rmarkdown
Quitting from extended.Rmd:99-116 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `ctd[[1]]`:
! object of type 'closure' is not subsettable
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'extended.Rmd' failed with diagnostics:
object of type 'closure' is not subsettable
--- failed re-building ‘extended.Rmd’
SUMMARY: processing the following files failed:
‘EWCE.Rmd’ ‘extended.Rmd’
Error: Vignette re-building failed.
Execution halted