Zixuan Shao
| Snapshot Date: 2025-08-10 13:45 -0400 (Sun, 10 Aug 2025) |
| git_url: https://git.bioconductor.org/packages/ERSSA |
| git_branch: devel |
| git_last_commit: 456b786 |
| git_last_commit_date: 2025-04-15 11:37:14 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-08-11 12:06 -0400 (Mon, 11 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4553 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4595 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4537 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4532 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 681/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ERSSA 1.27.0 (landing page) Zixuan Shao
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the ERSSA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ERSSA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ERSSA |
| Version: 1.27.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:ERSSA.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings ERSSA_1.27.0.tar.gz |
| StartedAt: 2025-08-10 22:13:01 -0400 (Sun, 10 Aug 2025) |
| EndedAt: 2025-08-10 22:17:59 -0400 (Sun, 10 Aug 2025) |
| EllapsedTime: 298.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ERSSA.Rcheck |
| Warnings: 0 |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:ERSSA.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings ERSSA_1.27.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/ERSSA.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘ERSSA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ERSSA’ version ‘1.27.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ERSSA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘apeglm’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) erssa.Rd:87: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) erssa.Rd:88: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) erssa.Rd:89: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) erssa.Rd:90-91: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) erssa.Rd:92-94: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) erssa.Rd:95-97: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) erssa.Rd:98-100: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ggplot2_TPR_FPRPlot.Rd:32-33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ggplot2_TPR_FPRPlot.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ggplot2_TPR_FPRPlot.Rd:35-37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ggplot2_dotplot.Rd:20-21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ggplot2_dotplot.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ggplot2_dotplot.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ggplot2_intersectPlot.Rd:20-21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ggplot2_intersectPlot.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ggplot2_intersectPlot.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ggplot2_intersectPlot.Rd:25-26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ggplot2_intersectPlot.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ggplot2_marginPlot.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ggplot2_marginPlot.Rd:25-26: Lost braces in \itemize; \value handles \item{}{} directly
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
erssa_deseq2_parallel 31.969 0.317 32.289
erssa_deseq2 30.385 0.225 30.619
erssa 9.904 0.203 10.099
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.22-bioc/meat/ERSSA.Rcheck/00check.log’
for details.
ERSSA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL ERSSA ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘ERSSA’ ... ** this is package ‘ERSSA’ version ‘1.27.0’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ERSSA)
ERSSA.Rcheck/ERSSA-Ex.timings
| name | user | system | elapsed | |
| comb_gen | 0.003 | 0.003 | 0.008 | |
| count_filter | 0.002 | 0.001 | 0.004 | |
| erssa | 9.904 | 0.203 | 10.099 | |
| erssa_deseq2 | 30.385 | 0.225 | 30.619 | |
| erssa_deseq2_parallel | 31.969 | 0.317 | 32.289 | |
| erssa_edger | 1.676 | 0.013 | 1.689 | |
| erssa_edger_parallel | 3.684 | 0.059 | 3.744 | |
| ggplot2_TPR_FPRPlot | 0.364 | 0.007 | 0.371 | |
| ggplot2_dotplot | 0.422 | 0.000 | 0.422 | |
| ggplot2_intersectPlot | 0.407 | 0.004 | 0.410 | |
| ggplot2_marginPlot | 0.319 | 0.001 | 0.320 | |