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This page was generated on 2025-08-12 12:05 -0400 (Tue, 12 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4818
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4553
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4595
kjohnson3macOS 13.7.1 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4537
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4535
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 647/2317HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ELViS 1.1.8  (landing page)
Jin-Young Lee
Snapshot Date: 2025-08-11 13:45 -0400 (Mon, 11 Aug 2025)
git_url: https://git.bioconductor.org/packages/ELViS
git_branch: devel
git_last_commit: 945ca32
git_last_commit_date: 2025-08-04 19:11:06 -0400 (Mon, 04 Aug 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for ELViS on nebbiolo2

To the developers/maintainers of the ELViS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ELViS.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ELViS
Version: 1.1.8
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 ELViS
StartedAt: 2025-08-11 19:41:33 -0400 (Mon, 11 Aug 2025)
EndedAt: 2025-08-11 19:42:29 -0400 (Mon, 11 Aug 2025)
EllapsedTime: 56.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 ELViS
###
##############################################################################
##############################################################################


* checking for file ‘ELViS/DESCRIPTION’ ... OK
* preparing ‘ELViS’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ELViS_Toy_Example.Rmd’ using rmarkdown

Quitting from ELViS_Toy_Example.Rmd:168-199 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Specified conda binary '/home/biocbuild/.cache/R/basilisk/1.21.5/0/bin/mamba' does not exist.
---
Backtrace:
    ▆
 1. ├─base::system.time(...)
 2. └─ELViS::get_depth_matrix(...)
 3.   └─ELViS:::get_envs_samtools_basilisk(...)
 4.     └─reticulate::conda_create(...)
 5.       └─reticulate::conda_binary(conda)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ELViS_Toy_Example.Rmd' failed with diagnostics:
Specified conda binary '/home/biocbuild/.cache/R/basilisk/1.21.5/0/bin/mamba' does not exist.
--- failed re-building ‘ELViS_Toy_Example.Rmd’

SUMMARY: processing the following file failed:
  ‘ELViS_Toy_Example.Rmd’

Error: Vignette re-building failed.
Execution halted