Jin-Young Lee
| Snapshot Date: 2025-08-01 13:25 -0400 (Fri, 01 Aug 2025) |
| git_url: https://git.bioconductor.org/packages/ELViS |
| git_branch: devel |
| git_last_commit: 2071db4 |
| git_last_commit_date: 2025-07-29 13:35:23 -0400 (Tue, 29 Jul 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-08-02 12:05 -0400 (Sat, 02 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4796 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4535 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4578 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4519 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4517 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 647/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ELViS 1.1.7 (landing page) Jin-Young Lee
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the ELViS package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ELViS.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ELViS |
| Version: 1.1.7 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 ELViS |
| StartedAt: 2025-08-01 17:06:38 -0400 (Fri, 01 Aug 2025) |
| EndedAt: 2025-08-01 17:07:42 -0400 (Fri, 01 Aug 2025) |
| EllapsedTime: 64.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 ELViS
###
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* checking for file ‘ELViS/DESCRIPTION’ ... OK
* preparing ‘ELViS’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ELViS_Toy_Example.Rmd’ using rmarkdown
Requirement already satisfied: pip in /home/biocbuild/.cache/R/basilisk/1.21.5/ELViS/1.1.7/env_samtools/lib/python3.12/site-packages (25.0.1)
Collecting pip
Using cached pip-25.2-py3-none-any.whl.metadata (4.7 kB)
Collecting wheel
Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
Collecting setuptools
Using cached setuptools-80.9.0-py3-none-any.whl.metadata (6.6 kB)
Using cached pip-25.2-py3-none-any.whl (1.8 MB)
Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
Using cached setuptools-80.9.0-py3-none-any.whl (1.2 MB)
Installing collected packages: wheel, setuptools, pip
Attempting uninstall: pip
Found existing installation: pip 25.0.1
Uninstalling pip-25.0.1:
Successfully uninstalled pip-25.0.1
Successfully installed pip-25.2 setuptools-80.9.0 wheel-0.45.1
ERROR: Could not find a version that satisfies the requirement samtools==1.22 (from versions: none)
ERROR: No matching distribution found for samtools==1.22
Quitting from ELViS_Toy_Example.Rmd:168-199 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Error installing package(s): "'samtools==1.22'"
---
Backtrace:
▆
1. ├─base::system.time(...)
2. └─ELViS::get_depth_matrix(...)
3. └─ELViS:::get_envs_samtools_basilisk(...)
4. └─basilisk::obtainEnvironmentPath(samtools_env)
5. └─basilisk::setupBasiliskEnv(...)
6. └─reticulate::virtualenv_create(...)
7. └─reticulate:::pip_install(python, packages)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ELViS_Toy_Example.Rmd' failed with diagnostics:
Error installing package(s): "'samtools==1.22'"
--- failed re-building ‘ELViS_Toy_Example.Rmd’
SUMMARY: processing the following file failed:
‘ELViS_Toy_Example.Rmd’
Error: Vignette re-building failed.
Execution halted