Bruno Contrino
| Snapshot Date: 2025-10-22 13:45 -0400 (Wed, 22 Oct 2025) |
| git_url: https://git.bioconductor.org/packages/Doscheda |
| git_branch: devel |
| git_last_commit: e1c4a5e |
| git_last_commit_date: 2025-04-15 11:13:35 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-10-23 12:07 -0400 (Thu, 23 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4894 |
| lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4684 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4629 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4642 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 618/2355 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Doscheda 1.31.0 (landing page) Bruno Contrino
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | ERROR | ||||||||||
|
To the developers/maintainers of the Doscheda package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Doscheda.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: Doscheda |
| Version: 1.31.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:Doscheda.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings Doscheda_1.31.0.tar.gz |
| StartedAt: 2025-10-21 07:38:30 -0000 (Tue, 21 Oct 2025) |
| EndedAt: 2025-10-21 07:38:35 -0000 (Tue, 21 Oct 2025) |
| EllapsedTime: 5.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: Doscheda.Rcheck |
| Warnings: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:Doscheda.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings Doscheda_1.31.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/Doscheda.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in close.connection(out) :
Problem closing connection: No space left on device
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))], out) :
problem writing to connection
Warning in writeBin(block[seq_len(min(512L, remain))]* using option ‘--no-vignettes’
* checking for file ‘Doscheda/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Doscheda’ version ‘1.31.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Doscheda’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ...Error: ChemoProtSet-class.Rd: Sections \title, and \name must exist and be unique in Rd files
Execution halted
Doscheda.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL Doscheda ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’ * installing *source* package ‘Doscheda’ ... ** this is package ‘Doscheda’ version ‘1.31.0’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading in method for ‘getInput’ with signature ‘"ChemoProtSet"’: no definition for class “ChemoProtSet” in method for ‘getNorm’ with signature ‘"ChemoProtSet"’: no definition for class “ChemoProtSet” in method for ‘getFinal’ with signature ‘"ChemoProtSet"’: no definition for class “ChemoProtSet” in method for ‘getParameters’ with signature ‘"ChemoProtSet"’: no definition for class “ChemoProtSet” in method for ‘getDatasets’ with signature ‘"ChemoProtSet"’: no definition for class “ChemoProtSet” in method for ‘boxplot’ with signature ‘"ChemoProtSet"’: no definition for class “ChemoProtSet” in method for ‘corrPlot’ with signature ‘"ChemoProtSet"’: no definition for class “ChemoProtSet” in method for ‘densityPlot’ with signature ‘"ChemoProtSet"’: no definition for class “ChemoProtSet” Creating a new generic function for ‘meanSdPlot’ in package ‘Doscheda’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Doscheda)