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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DeconRNASeq
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* checking for file ‘DeconRNASeq/DESCRIPTION’ ... OK
* preparing ‘DeconRNASeq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DeconRNASeq.Rnw’ using Sweave
Loading required package: limSolve
Loading required package: pcaMethods
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: generics
Attaching package: ‘generics’
The following objects are masked from ‘package:base’:
as.difftime, as.factor, as.ordered, intersect,
is.element, setdiff, setequal, union
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce,
anyDuplicated, aperm, append, as.data.frame,
basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl,
is.unsorted, lapply, mapply, match, mget, order,
paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rownames, sapply, saveRDS, table, tapply,
unique, unsplit, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view
with 'browseVignettes()'. To cite Bioconductor,
see 'citation("Biobase")', and for packages
'citation("pkgname")'.
Attaching package: ‘pcaMethods’
The following object is masked from ‘package:stats’:
loadings
Loading required package: ggplot2
Attaching package: ‘ggplot2’
The following object is masked from ‘package:limSolve’:
resolution
Loading required package: grid
Error: processing vignette 'DeconRNASeq.Rnw' failed with diagnostics:
chunk 5 (label = Deconolution)
Error in length(parray) <- ncol(out.all) :
cannot set length of non-(vector or list)
--- failed re-building ‘DeconRNASeq.Rnw’
SUMMARY: processing the following file failed:
‘DeconRNASeq.Rnw’
Error: Vignette re-building failed.
Execution halted