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### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:DTA.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings DTA_2.53.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/DTA.Rcheck’
* using R Under development (unstable) (2024-11-24 r87369)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DTA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DTA’ version ‘2.53.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DTA’ can be installed ... OK
* checking installed package size ... INFO
  installed size is  7.2Mb
  sub-directories of 1Mb or more:
    data   6.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
DTA.dynamic.estimate : ellipse.coordinates: no visible global function
  definition for ‘qchisq’
DTA.dynamic.estimate : plotsfkt: no visible global function definition
  for ‘par’
DTA.dynamic.estimate: no visible global function definition for
  ‘quantile’
DTA.dynamic.estimate : plotsfkt: no visible global function definition
  for ‘points’
DTA.dynamic.estimate : plotsfkt: no visible global function definition
  for ‘sd’
DTA.dynamic.estimate : plotsfkt: no visible global function definition
  for ‘legend’
DTA.dynamic.generate: no visible global function definition for ‘rf’
DTA.dynamic.generate: no visible global function definition for
  ‘median’
DTA.dynamic.generate : <anonymous>: no visible global function
  definition for ‘rnorm’
DTA.dynamic.generate: no visible binding for global variable ‘median’
DTA.dynamic.singlegenerate : plotsfkt: no visible global function
  definition for ‘par’
DTA.dynamic.singlegenerate : plotsfkt: no visible global function
  definition for ‘points’
DTA.dynamic.singlegenerate : plotsfkt: no visible global function
  definition for ‘abline’
DTA.dynamic.singlegenerate : plotsfkt: no visible global function
  definition for ‘legend’
DTA.generate: no visible global function definition for ‘rf’
DTA.generate: no visible global function definition for ‘rnorm’
DTA.map.it: no visible global function definition for ‘aggregate’
DTA.map.it : <anonymous>: no visible global function definition for
  ‘median’
DTA.plot.it: no visible global function definition for ‘jpeg’
DTA.plot.it: no visible global function definition for ‘png’
DTA.plot.it: no visible global function definition for ‘bmp’
DTA.plot.it: no visible global function definition for ‘tiff’
DTA.plot.it: no visible global function definition for ‘postscript’
DTA.plot.it: no visible global function definition for ‘pdf’
DTA.plot.it: no visible global function definition for ‘dev.off’
DTA.plot.it: no visible global function definition for ‘dev.new’
DTA.singleestimate: no visible global function definition for ‘median’
DTA.singleestimate : lossfct: no visible global function definition for
  ‘median’
DTA.singleestimate: no visible global function definition for
  ‘optimize’
DTA.singleestimate: no visible global function definition for ‘lm’
DTA.singleestimate: no visible global function definition for
  ‘coefficients’
DTA.singleestimate: no visible global function definition for
  ‘quantile’
DTA.singleestimate : plotsfkt: no visible global function definition
  for ‘par’
DTA.singleestimate : plotsfkt: no visible global function definition
  for ‘points’
DTA.singleestimate : plotsfkt: no visible global function definition
  for ‘abline’
DTA.singleestimate : plotsfkt: no visible global function definition
  for ‘median’
DTA.singleestimate: no visible binding for global variable ‘median’
DTA.singleestimate : plotsfkt: no visible binding for global variable
  ‘median’
DTA.singleestimate : plotsfkt: no visible global function definition
  for ‘hist’
DTA.singleestimate : plotsfkt: no visible global function definition
  for ‘text’
DTA.singleestimate: no visible global function definition for ‘cor’
DTA.singleestimate : plotsfkt: no visible global function definition
  for ‘layout’
DTA.singleestimate : plotsfkt: no visible global function definition
  for ‘image’
DTA.singleestimate : plotsfkt: no visible global function definition
  for ‘colorRampPalette’
DTA.singleestimate : plotsfkt: no visible global function definition
  for ‘axis’
DTA.singleestimate : plotsfkt: no visible global function definition
  for ‘box’
DTA.singleestimate: no visible binding for global variable ‘sd’
DTA.singleestimate: no visible global function definition for ‘loess’
DTA.singleestimate : <anonymous>: no visible global function definition
  for ‘optimize’
DTA.singleestimate : plotsfkt: no visible global function definition
  for ‘persp’
DTA.singleestimate : plotsfkt: no visible global function definition
  for ‘polygon’
DTA.singleestimate : plotsfkt: no visible global function definition
  for ‘trans3d’
DTA.singleestimate : plotsfkt: no visible global function definition
  for ‘lines’
DTA.singleestimate : plotsfkt: no visible global function definition
  for ‘dgamma’
DTA.singleestimate : plotsfkt: no visible global function definition
  for ‘mtext’
DTA.singleestimate : plotsfkt: no visible global function definition
  for ‘legend’
DTA.singleestimate : <anonymous>: no visible global function definition
  for ‘rnorm’
DTA.singleestimate : <anonymous>: no visible global function definition
  for ‘quantile’
DTA.singleestimate : plotsfkt: no visible global function definition
  for ‘quantile’
DTA.singleestimate : plotsfkt: no visible global function definition
  for ‘coefficients’
DTA.singleestimate : plotsfkt: no visible global function definition
  for ‘density’
DTA.singlegenerate: no visible global function definition for ‘median’
DTA.singlegenerate: no visible global function definition for ‘rnorm’
gridfkt: no visible global function definition for ‘abline’
gridfkt: no visible global function definition for ‘text’
likelihood: no visible global function definition for ‘dnorm’
likelihood: no visible global function definition for ‘dgamma’
medctr: no visible binding for global variable ‘median’
medctr: no visible global function definition for ‘median’
mediancenter: no visible binding for global variable ‘median’
mediancenter: no visible global function definition for ‘median’
mtextfkt: no visible global function definition for ‘mtext’
parfkt: no visible global function definition for ‘par’
pcor: no visible global function definition for ‘cor’
scor: no visible global function definition for ‘cor’
tls: no visible global function definition for ‘model.response’
tls: no visible global function definition for ‘model.matrix’
tls: no visible binding for global variable ‘contrasts’
toquantiles: no visible global function definition for ‘quantile’
wtls.solve: no visible global function definition for ‘lm’
wtls.solve: no visible global function definition for ‘uniroot’
Undefined global functions or variables:
  abline aggregate axis bmp box coefficients colorRampPalette contrasts
  cor density dev.new dev.off dgamma dnorm hist image jpeg layout
  legend lines lm loess median model.matrix model.response mtext
  optimize par pdf persp png points polygon postscript qchisq quantile
  rf rnorm sd text tiff trans3d uniroot
Consider adding
  importFrom("grDevices", "bmp", "colorRampPalette", "dev.new",
             "dev.off", "jpeg", "pdf", "png", "postscript", "tiff",
             "trans3d")
  importFrom("graphics", "abline", "axis", "box", "hist", "image",
             "layout", "legend", "lines", "mtext", "par", "persp",
             "points", "polygon", "text")
  importFrom("stats", "aggregate", "coefficients", "contrasts", "cor",
             "density", "dgamma", "dnorm", "lm", "loess", "median",
             "model.matrix", "model.response", "optimize", "qchisq",
             "quantile", "rf", "rnorm", "sd", "uniroot")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
DTA.dynamic.generate 74.112  1.557  75.835
DTA.estimate         54.289  0.395  54.804
DTA.generate         47.635  0.323  48.068
DTA.dynamic.estimate 35.786  0.020  35.893
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/DTA.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD INSTALL DTA
###
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* installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’
* installing *source* package ‘DTA’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DTA)