Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2024-12-24 11:43 -0500 (Tue, 24 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4373 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 587/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
DNAcopy 1.81.0 (landing page) Venkatraman E. Seshan
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the DNAcopy package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DNAcopy.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: DNAcopy |
Version: 1.81.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL DNAcopy |
StartedAt: 2024-12-23 15:03:41 -0500 (Mon, 23 Dec 2024) |
EndedAt: 2024-12-23 15:03:54 -0500 (Mon, 23 Dec 2024) |
EllapsedTime: 13.0 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL DNAcopy ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘DNAcopy’ ... ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using Fortran compiler: ‘GNU Fortran (GCC) 12.2.0’ using SDK: ‘MacOSX11.3.sdk’ /opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c cbsWtstats.f -o cbsWtstats.o cbsWtstats.f:17:23: 17 | 2 tmaxi, tmaxj, nal0 | ^ Warning: ‘tmaxj’ may be used uninitialized [-Wmaybe-uninitialized] cbsWtstats.f:17:16: 17 | 2 tmaxi, tmaxj, nal0 | ^ Warning: ‘tmaxi’ may be used uninitialized [-Wmaybe-uninitialized] /opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c cbststats.f -o cbststats.o cbststats.f:11:63: 11 | 1 nb2, bi, bj, ilo, ihi, jlo, jhi, alenmax, i2j, sxmxi, | ^ Warning: ‘sxmxi’ may be used uninitialized [-Wmaybe-uninitialized] /opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c changepoints-wtd.f -o changepoints-wtd.o /opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c changepoints.f -o changepoints.o /opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c esegment.f -o esegment.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c flchoose.c -o flchoose.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fphyper.c -o fphyper.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fpnorm.c -o fpnorm.o /opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c getbdry.f -o getbdry.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o /opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c prune.f -o prune.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rshared.c -o rshared.o /opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c segmentp.f -o segmentp.o /opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c smoothCNA.f -o smoothCNA.o /opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c tailprobs.f -o tailprobs.o clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o init.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-DNAcopy/00new/DNAcopy/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DNAcopy)