Michael Love
| Snapshot Date: 2024-12-02 13:40 -0500 (Mon, 02 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/DESeq2 |
| git_branch: devel |
| git_last_commit: 30cc350 |
| git_last_commit_date: 2024-11-14 11:16:20 -0500 (Thu, 14 Nov 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-12-03 11:46 -0500 (Tue, 03 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4748 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4461 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4405 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4360 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 1457 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 547/2272 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DESeq2 1.47.1 (landing page) Michael Love
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the DESeq2 package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DESeq2.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: DESeq2 |
| Version: 1.47.1 |
| Command: /home/biocbuild/R/R/bin/R CMD INSTALL DESeq2 |
| StartedAt: 2024-12-02 23:05:39 -0000 (Mon, 02 Dec 2024) |
| EndedAt: 2024-12-02 23:05:40 -0000 (Mon, 02 Dec 2024) |
| EllapsedTime: 1.0 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD INSTALL DESeq2
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* installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’
ERROR: dependencies ‘GenomicRanges’, ‘SummarizedExperiment’, ‘ggplot2’ are not available for package ‘DESeq2’
Perhaps try a variation of:
install.packages(c('GenomicRanges', 'SummarizedExperiment', 'ggplot2'))
* removing ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/DESeq2’