Back to Multiple platform build/check report for BioC 3.21:   simplified   long
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2024-11-30 12:47 -0500 (Sat, 30 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4748
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4461
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4403
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 321/2272HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChemmineR 3.59.0  (landing page)
Thomas Girke
Snapshot Date: 2024-11-29 13:40 -0500 (Fri, 29 Nov 2024)
git_url: https://git.bioconductor.org/packages/ChemmineR
git_branch: devel
git_last_commit: ee3bf9e
git_last_commit_date: 2024-10-29 09:30:11 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped

BUILD results for ChemmineR on lconway

To the developers/maintainers of the ChemmineR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ChemmineR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ChemmineR
Version: 3.59.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ChemmineR
StartedAt: 2024-11-29 16:13:33 -0500 (Fri, 29 Nov 2024)
EndedAt: 2024-11-29 16:15:17 -0500 (Fri, 29 Nov 2024)
EllapsedTime: 103.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ChemmineR
###
##############################################################################
##############################################################################


* checking for file ‘ChemmineR/DESCRIPTION’ ... OK
* preparing ‘ChemmineR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ChemmineR.Rmd’ using rmarkdown
2024-11-29 16:14:15.761 R[47852:527816569] XType: com.apple.fonts is not accessible.
2024-11-29 16:14:15.761 R[47852:527816569] XType: XTFontStaticRegistry is enabled.

Quitting from lines 538-539 [unnamed-chunk-39] (ChemmineR.Rmd)
Error: processing vignette 'ChemmineR.Rmd' failed with diagnostics:
cannot open the connection to 'https://cluster.hpcc.ucr.edu/~tgirke/Documents/R_BioCond/Samples/v3000.sdf'
--- failed re-building ‘ChemmineR.Rmd’

SUMMARY: processing the following file failed:
  ‘ChemmineR.Rmd’

Error: Vignette re-building failed.
Execution halted