Akira Cortal
| Snapshot Date: 2025-10-27 13:45 -0400 (Mon, 27 Oct 2025) |
| git_url: https://git.bioconductor.org/packages/CelliD |
| git_branch: devel |
| git_last_commit: b801e21 |
| git_last_commit_date: 2025-04-15 12:23:04 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-10-28 12:03 -0400 (Tue, 28 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4901 |
| lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4691 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4637 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 309/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CelliD 1.17.0 (landing page) Akira Cortal
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
|
To the developers/maintainers of the CelliD package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CelliD.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: CelliD |
| Version: 1.17.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CelliD |
| StartedAt: 2025-10-27 16:17:56 -0400 (Mon, 27 Oct 2025) |
| EndedAt: 2025-10-27 16:35:23 -0400 (Mon, 27 Oct 2025) |
| EllapsedTime: 1047.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CelliD
###
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* checking for file ‘CelliD/DESCRIPTION’ ... OK
* preparing ‘CelliD’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘BioconductorVignette.Rmd’ using rmarkdown
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2025-10-27 16:22:53.284 R[38839:646921046] XType: com.apple.fonts is not accessible.
2025-10-27 16:22:53.285 R[38839:646921046] XType: XTFontStaticRegistry is enabled.
Using method 'umap'
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Quitting from BioconductorVignette.Rmd:131-146 [pancreas_gs]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection
---
Backtrace:
▆
1. ├─readr::read_tsv("https://panglaodb.se/markers/PanglaoDB_markers_27_Mar_2020.tsv.gz")
2. │ └─vroom::vroom(...)
3. │ └─vroom:::vroom_(...)
4. ├─base (local) `<fn>`(`<gzcon>`, "rb")
5. └─base::open.connection(`<gzcon>`, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'BioconductorVignette.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘BioconductorVignette.Rmd’
SUMMARY: processing the following file failed:
‘BioconductorVignette.Rmd’
Error: Vignette re-building failed.
Execution halted