Multiple platform build/check report for BioC 3.22 - BUILD results for COSNet on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4795
palomino8	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4534
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4577
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4518
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4512
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for COSNet on nebbiolo2

To the developers/maintainers of the COSNet package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/COSNet.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: COSNet

Version: 1.43.0

Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 COSNet

StartedAt: 2025-07-25 18:58:15 -0400 (Fri, 25 Jul 2025)

EndedAt: 2025-07-25 19:00:54 -0400 (Fri, 25 Jul 2025)

EllapsedTime: 159.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 COSNet
###
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* checking for file ‘COSNet/DESCRIPTION’ ... OK
* preparing ‘COSNet’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘COSNet_v.Rnw’ using Sweave
Loading required package: limma
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: generics

Attaching package: ‘generics’

The following objects are masked from ‘package:base’:

    as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
    setequal, union


Attaching package: ‘BiocGenerics’

The following object is masked from ‘package:limma’:

    plotMA

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
    mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
    rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
    unsplit, which.max, which.min

Loading required package: RBGL
PerfMeas: Performance Measures for ranking and classification tasks.

Warning in file(file, "rt") :
  URL 'http://frasca.di.unimi.it/cosnetdata/u.sum.fly.txt': Timeout of 600 seconds was reached

Error: processing vignette 'COSNet_v.Rnw' failed with diagnostics:
 chunk 8 (label = a8) 
Error in file(file, "rt") : 
  cannot open the connection to 'http://frasca.di.unimi.it/cosnetdata/u.sum.fly.txt'

--- failed re-building ‘COSNet_v.Rnw’

SUMMARY: processing the following file failed:
  ‘COSNet_v.Rnw’

Error: Vignette re-building failed.
Execution halted