Back to Multiple platform build/check report for BioC 3.22:   simplified   long
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2025-05-08 12:09 -0400 (Thu, 08 May 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4746
palomino8Windows Server 2022 Datacenterx644.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six" 4508
lconwaymacOS 12.7.1 Montereyx86_644.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" 4547
kjohnson3macOS 13.7.1 Venturaarm644.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" 4488
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4441
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 402/2304HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNVRanger 1.25.2  (landing page)
Ludwig Geistlinger
Snapshot Date: 2025-05-07 13:00 -0400 (Wed, 07 May 2025)
git_url: https://git.bioconductor.org/packages/CNVRanger
git_branch: devel
git_last_commit: 18d3216
git_last_commit_date: 2025-05-07 12:26:36 -0400 (Wed, 07 May 2025)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  YES
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  YES
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  YES
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  YES
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


BUILD BIN results for CNVRanger on kjohnson3

To the developers/maintainers of the CNVRanger package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CNVRanger.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: CNVRanger
Version: 1.25.2
Command: rm -rf CNVRanger.buildbin-libdir && mkdir CNVRanger.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNVRanger_1.25.2.tar.gz /Library/Frameworks/R.framework/Resources/bin/R CNVRanger.buildbin-libdir
StartedAt: 2025-05-07 22:50:24 -0400 (Wed, 07 May 2025)
EndedAt: 2025-05-07 22:50:35 -0400 (Wed, 07 May 2025)
EllapsedTime: 11.3 seconds
RetCode: 0
Status:   OK  
PackageFile: CNVRanger_1.25.2.tgz
PackageFileSize: 2.064 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf CNVRanger.buildbin-libdir && mkdir CNVRanger.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNVRanger_1.25.2.tar.gz /Library/Frameworks/R.framework/Resources/bin/R CNVRanger.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CNVRanger.buildbin-libdir CNVRanger_1.25.2.tar.gz'
>>>>>>> 

* installing *source* package ‘CNVRanger’ ...
** this is package ‘CNVRanger’ version ‘1.25.2’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CNVRanger)