Attila Gabor
| Snapshot Date: 2025-02-02 13:40 -0500 (Sun, 02 Feb 2025) |
| git_url: https://git.bioconductor.org/packages/CNORode |
| git_branch: devel |
| git_last_commit: 851f051 |
| git_last_commit_date: 2024-10-29 09:43:02 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-02-03 12:37 -0500 (Mon, 03 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4704 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4467 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" | 4478 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 387/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CNORode 1.49.0 (landing page) Attila Gabor
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
|
To the developers/maintainers of the CNORode package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CNORode.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: CNORode |
| Version: 1.49.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL CNORode |
| StartedAt: 2025-02-02 15:29:30 -0500 (Sun, 02 Feb 2025) |
| EndedAt: 2025-02-02 15:29:46 -0500 (Sun, 02 Feb 2025) |
| EllapsedTime: 15.2 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL CNORode ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘CNORode’ ... ** this is package ‘CNORode’ version ‘1.49.0’ ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c FG_transfer_function.c -o FG_transfer_function.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c cvodea.c -o cvodea.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c cvodea_io.c -o cvodea_io.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c cvodes.c -o cvodes.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c cvodes_band.c -o cvodes_band.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c cvodes_bandpre.c -o cvodes_bandpre.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c cvodes_bbdpre.c -o cvodes_bbdpre.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c cvodes_dense.c -o cvodes_dense.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c cvodes_diag.c -o cvodes_diag.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c cvodes_direct.c -o cvodes_direct.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c cvodes_io.c -o cvodes_io.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c cvodes_spbcgs.c -o cvodes_spbcgs.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c cvodes_spgmr.c -o cvodes_spgmr.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c cvodes_spils.c -o cvodes_spils.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c cvodes_sptfqmr.c -o cvodes_sptfqmr.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c decimal2binary.c -o decimal2binary.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c findStates.c -o findStates.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c fnvector_serial.c -o fnvector_serial.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c getAdjacencyMatrix.c -o getAdjacencyMatrix.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c getNumBits.c -o getNumBits.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c getNumInputs.c -o getNumInputs.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c getStateIndex.c -o getStateIndex.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c getTruthTables.c -o getTruthTables.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c get_count_bits.c -o get_count_bits.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c get_input_index.c -o get_input_index.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c get_support_truth_tables.c -o get_support_truth_tables.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c get_truth_tables_index.c -o get_truth_tables_index.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c hill_function.c -o hill_function.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c linear_transfer_function.c -o linear_transfer_function.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c normHill.c -o normHill.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c normHill_mod.c -o normHill_mod.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c nvector_serial.c -o nvector_serial.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c printAdjMat.c -o printAdjMat.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c printInterMat.c -o printInterMat.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c printNminiTerms.c -o printNminiTerms.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c printTruthTables.c -o printTruthTables.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c rhsODE.c -o rhsODE.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c sim_logic_ode.c -o sim_logic_ode.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c simulateODE.c -o simulateODE.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c sundials_band.c -o sundials_band.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c sundials_dense.c -o sundials_dense.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c sundials_direct.c -o sundials_direct.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c sundials_iterative.c -o sundials_iterative.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c sundials_math.c -o sundials_math.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c sundials_nvector.c -o sundials_nvector.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c sundials_spbcgs.c -o sundials_spbcgs.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c sundials_spgmr.c -o sundials_spgmr.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -I./include -fpic -g -O2 -c sundials_sptfqmr.c -o sundials_sptfqmr.o gcc -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o CNORode.so FG_transfer_function.o cvodea.o cvodea_io.o cvodes.o cvodes_band.o cvodes_bandpre.o cvodes_bbdpre.o cvodes_dense.o cvodes_diag.o cvodes_direct.o cvodes_io.o cvodes_spbcgs.o cvodes_spgmr.o cvodes_spils.o cvodes_sptfqmr.o decimal2binary.o findStates.o fnvector_serial.o getAdjacencyMatrix.o getNumBits.o getNumInputs.o getStateIndex.o getTruthTables.o get_count_bits.o get_input_index.o get_support_truth_tables.o get_truth_tables_index.o hill_function.o linear_transfer_function.o normHill.o normHill_mod.o nvector_serial.o printAdjMat.o printInterMat.o printNminiTerms.o printTruthTables.o rhsODE.o sim_logic_ode.o simulateODE.o sundials_band.o sundials_dense.o sundials_direct.o sundials_iterative.o sundials_math.o sundials_nvector.o sundials_spbcgs.o sundials_spgmr.o sundials_sptfqmr.o -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.21-bioc/R/site-library/00LOCK-CNORode/00new/CNORode/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CNORode)