##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:CBN2Path.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings CBN2Path_1.1.4.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/CBN2Path.Rcheck’
* using R Under development (unstable) (2026-03-20 r89666)
* using platform: aarch64-apple-darwin23
* R was compiled by
    Apple clang version 17.0.0 (clang-1700.3.19.1)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-03-25 23:03:30 UTC
* using option ‘--no-vignettes’
* checking for file ‘CBN2Path/DESCRIPTION’ ... OK
* this is package ‘CBN2Path’ version ‘1.1.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CBN2Path’ can be installed ... WARNING
Found the following significant warnings:
  bcbn.c:554:36: warning: if statement has empty body [-Wempty-body]
  bcbn.c:611:30: warning: if statement has empty body [-Wempty-body]
  bcbn.c:623:43: warning: if statement has empty body [-Wempty-body]
  bcbn.c:633:45: warning: if statement has empty body [-Wempty-body]
  bcbn.c:931:30: warning: if statement has empty body [-Wempty-body]
  bcbn.c:943:43: warning: if statement has empty body [-Wempty-body]
  bcbn.c:953:45: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:551:36: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:611:36: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:670:30: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:682:43: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:692:45: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:719:33: warning: if statement has empty body [-Wempty-body]
See ‘/Users/biocbuild/bbs-3.23-bioc/meat/CBN2Path.Rcheck/00install.out’ for details.
* used C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
* used SDK: ‘MacOSX26.2.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Found the following CITATION file in a non-standard place:
  CITATION.cff
Most likely ‘inst/CITATION’ should be used instead.
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
bcbn: no visible global function definition for ‘SnowParam’
bcbn: no visible binding for global variable ‘datasets’
ctcbn: no visible global function definition for ‘SnowParam’
generateGeomNodePoint: no visible binding for global variable ‘nodes’
generateGeomNodeText: no visible binding for global variable ‘nodes’
generateGgText: no visible binding for global variable ‘x’
generateGgText: no visible binding for global variable ‘y’
generateGgText: no visible binding for global variable ‘label’
generateMatrixGenotypes : f1 : <anonymous>: no visible global function
  definition for ‘combn’
hcbn: no visible global function definition for ‘SnowParam’
variableCapSize: no visible binding for global variable ‘edges’
variableCapSize: no visible binding for global variable ‘x’
variableCapSize: no visible binding for global variable ‘y’
visualizeCBNModel: no visible binding for global variable ‘name’
visualizeFitnessLandscape: no visible binding for global variable ‘x’
visualizeFitnessLandscape: no visible binding for global variable ‘y’
visualizeFitnessLandscape: no visible binding for global variable
  ‘name’
visualizeProbabilities: no visible binding for global variable ‘name’
Undefined global functions or variables:
  SnowParam combn datasets edges label name nodes x y
Consider adding
  importFrom("utils", "combn")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
File ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library/CBN2Path/libs/CBN2Path.so’:
  Found ‘___stderrp’, possibly from ‘stderr’ (C)
  Found ‘___stdoutp’, possibly from ‘stdout’ (C)
  Found ‘_abort’, possibly from ‘abort’ (C)
  Found ‘_printf’, possibly from ‘printf’ (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
hcbnSingle              30.418  0.355  31.821
pathProbQuartetBCBN     12.073  0.829  13.276
visualizeProbabilities  12.621  0.219  13.305
bcbn                     5.415  4.160   9.891
jensenShannonDivergence  5.000  1.176   6.397
pathProbQuartetRCBN      3.896  1.106   5.178
Predictability           4.231  0.672   5.069
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 4 NOTEs
See
  ‘/Users/biocbuild/bbs-3.23-bioc/meat/CBN2Path.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL CBN2Path
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘CBN2Path’ ...
** this is package ‘CBN2Path’ version ‘1.1.4’
** using staged installation
checking for gcc... clang -arch arm64 -std=gnu23
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether clang -arch arm64 -std=gnu23 accepts -g... yes
checking for clang -arch arm64 -std=gnu23 option to enable C11 features... -std=gnu11
checking for gsl-config... /opt/R/arm64/bin/gsl-config
checking if GSL version >= 2.5... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I.  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c bcbn.c -o bcbn.o
bcbn.c:433:7: warning: unused variable 'i' [-Wunused-variable]
  433 |   int i;
      |       ^
bcbn.c:554:36: warning: if statement has empty body [-Wempty-body]
  554 |   if(fscanf(input, "%d %d", N, &p));
      |                                    ^
bcbn.c:554:36: note: put the semicolon on a separate line to silence this warning
bcbn.c:611:30: warning: if statement has empty body [-Wempty-body]
  611 |   if(fscanf(input, "%d", &n));
      |                              ^
bcbn.c:611:30: note: put the semicolon on a separate line to silence this warning
bcbn.c:623:43: warning: if statement has empty body [-Wempty-body]
  623 |   if(fscanf(input,"%d %d", &left, &right));
      |                                           ^
bcbn.c:623:43: note: put the semicolon on a separate line to silence this warning
bcbn.c:633:45: warning: if statement has empty body [-Wempty-body]
  633 |     if(fscanf(input,"%d %d", &left, &right));
      |                                             ^
bcbn.c:633:45: note: put the semicolon on a separate line to silence this warning
bcbn.c:641:7: warning: unused variable 'i' [-Wunused-variable]
  641 |   int i;
      |       ^
bcbn.c:931:30: warning: if statement has empty body [-Wempty-body]
  931 |   if(fscanf(input, "%d", &n));
      |                              ^
bcbn.c:931:30: note: put the semicolon on a separate line to silence this warning
bcbn.c:943:43: warning: if statement has empty body [-Wempty-body]
  943 |   if(fscanf(input,"%d %d", &left, &right));
      |                                           ^
bcbn.c:943:43: note: put the semicolon on a separate line to silence this warning
bcbn.c:953:45: warning: if statement has empty body [-Wempty-body]
  953 |     if(fscanf(input,"%d %d", &left, &right));
      |                                             ^
bcbn.c:953:45: note: put the semicolon on a separate line to silence this warning
bcbn.c:1056:9: warning: unused variable 'j' [-Wunused-variable]
 1056 |   int i,j,c,k;
      |         ^
bcbn.c:1056:13: warning: unused variable 'k' [-Wunused-variable]
 1056 |   int i,j,c,k;
      |             ^
bcbn.c:1075:10: warning: variable 'p' set but not used [-Wunused-but-set-variable]
 1075 |   double p = 0;
      |          ^
bcbn.c:1281:15: warning: unused variable 'likelihood' [-Wunused-variable]
 1281 |   long double likelihood, likelihood_d;
      |               ^~~~~~~~~~
bcbn.c:1367:21: warning: unused variable 'var' [-Wunused-variable]
 1367 |   double alpha,beta,var,x;
      |                     ^~~
bcbn.c:1367:25: warning: variable 'x' set but not used [-Wunused-but-set-variable]
 1367 |   double alpha,beta,var,x;
      |                         ^
bcbn.c:1380:21: warning: unused variable 'var' [-Wunused-variable]
 1380 |   double alpha,beta,var,x;
      |                     ^~~
bcbn.c:1380:25: warning: variable 'x' set but not used [-Wunused-but-set-variable]
 1380 |   double alpha,beta,var,x;
      |                         ^
bcbn.c:1449:11: warning: unused variable 'k' [-Wunused-variable]
 1449 |   int i,j,k,N_compatible,N_all_comp;
      |           ^
bcbn.c:1550:11: warning: variable 'N_all_comp' set but not used [-Wunused-but-set-variable]
 1550 |   int i,j,N_all_comp,N_compatible,k;
      |           ^
bcbn.c:1550:22: warning: unused variable 'N_compatible' [-Wunused-variable]
 1550 |   int i,j,N_all_comp,N_compatible,k;
      |                      ^~~~~~~~~~~~
bcbn.c:1550:35: warning: unused variable 'k' [-Wunused-variable]
 1550 |   int i,j,N_all_comp,N_compatible,k;
      |                                   ^
bcbn.c:1675:10: warning: unused variable 'alpha' [-Wunused-variable]
 1675 |   double alpha,beta,var,x;
      |          ^~~~~
bcbn.c:1675:16: warning: unused variable 'beta' [-Wunused-variable]
 1675 |   double alpha,beta,var,x;
      |                ^~~~
bcbn.c:1675:21: warning: unused variable 'var' [-Wunused-variable]
 1675 |   double alpha,beta,var,x;
      |                     ^~~
bcbn.c:1675:25: warning: unused variable 'x' [-Wunused-variable]
 1675 |   double alpha,beta,var,x;
      |                         ^
bcbn.c:1755:11: warning: unused variable 'k' [-Wunused-variable]
 1755 |   int i,j,k,N_compatible,N_all_comp;
      |           ^
bcbn.c:1878:11: warning: unused variable 'k' [-Wunused-variable]
 1878 |   int i,j,k,N_compatible,N_all_comp;
      |           ^
bcbn.c:1878:13: warning: unused variable 'N_compatible' [-Wunused-variable]
 1878 |   int i,j,k,N_compatible,N_all_comp;
      |             ^~~~~~~~~~~~
bcbn.c:1878:26: warning: variable 'N_all_comp' set but not used [-Wunused-but-set-variable]
 1878 |   int i,j,k,N_compatible,N_all_comp;
      |                          ^
bcbn.c:1946:11: warning: unused variable 'k' [-Wunused-variable]
 1946 |   int i,j,k,N_compatible,N_all_comp;
      |           ^
bcbn.c:1946:13: warning: unused variable 'N_compatible' [-Wunused-variable]
 1946 |   int i,j,k,N_compatible,N_all_comp;
      |             ^~~~~~~~~~~~
bcbn.c:1946:26: warning: variable 'N_all_comp' set but not used [-Wunused-but-set-variable]
 1946 |   int i,j,k,N_compatible,N_all_comp;
      |                          ^
bcbn.c:1957:7: warning: unused variable 'c' [-Wunused-variable]
 1957 |   int c = 0;
      |       ^
bcbn.c:1997:11: warning: unused variable 'k' [-Wunused-variable]
 1997 |   int i,j,k,N_compatible,N_all_comp;
      |           ^
bcbn.c:1997:13: warning: unused variable 'N_compatible' [-Wunused-variable]
 1997 |   int i,j,k,N_compatible,N_all_comp;
      |             ^~~~~~~~~~~~
bcbn.c:1997:26: warning: variable 'N_all_comp' set but not used [-Wunused-but-set-variable]
 1997 |   int i,j,k,N_compatible,N_all_comp;
      |                          ^
bcbn.c:2008:7: warning: unused variable 'c' [-Wunused-variable]
 2008 |   int c = 0;
      |       ^
bcbn.c:2358:7: warning: unused variable 'i' [-Wunused-variable]
 2358 |   int i,j,k = 0;
      |       ^
bcbn.c:2358:9: warning: unused variable 'j' [-Wunused-variable]
 2358 |   int i,j,k = 0;
      |         ^
bcbn.c:2362:7: warning: unused variable 'accepted' [-Wunused-variable]
 2362 |   int accepted = 0;
      |       ^~~~~~~~
bcbn.c:2620:22: warning: unused variable 'MH_ratio' [-Wunused-variable]
 2620 |   long double alpha, MH_ratio;
      |                      ^~~~~~~~
bcbn.c:2630:7: warning: variable 'accepted' set but not used [-Wunused-but-set-variable]
 2630 |   int accepted = 0;
      |       ^
bcbn.c:2633:7: warning: variable 'n_edges' set but not used [-Wunused-but-set-variable]
 2633 |   int n_edges = 0;
      |       ^
43 warnings generated.
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I.  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ctcbn.c -o ctcbn.o
In file included from ctcbn.c:3:
./ct-cbn.h:184:7: warning: unused variable 'j' [-Wunused-variable]
  184 |   int j;
      |       ^
./ct-cbn.h:551:36: warning: if statement has empty body [-Wempty-body]
  551 |   if(fscanf(input, "%d %d", N, &p));
      |                                    ^
./ct-cbn.h:551:36: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:611:36: warning: if statement has empty body [-Wempty-body]
  611 |   if(fscanf(input, "%d %d", N, &p));
      |                                    ^
./ct-cbn.h:611:36: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:670:30: warning: if statement has empty body [-Wempty-body]
  670 |   if(fscanf(input, "%d", &n));
      |                              ^
./ct-cbn.h:670:30: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:682:43: warning: if statement has empty body [-Wempty-body]
  682 |   if(fscanf(input,"%d %d", &left, &right));
      |                                           ^
./ct-cbn.h:682:43: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:692:45: warning: if statement has empty body [-Wempty-body]
  692 |     if(fscanf(input,"%d %d", &left, &right));
      |                                             ^
./ct-cbn.h:692:45: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:719:33: warning: if statement has empty body [-Wempty-body]
  719 |     if(fscanf(input, "%lf", &x));
      |                                 ^
./ct-cbn.h:719:33: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:803:7: warning: unused variable 'i' [-Wunused-variable]
  803 |   int i;
      |       ^
./ct-cbn.h:2721:17: warning: variable 'alpha_new' set but not used [-Wunused-but-set-variable]
 2721 |   double alpha, alpha_new;
      |                 ^
./ct-cbn.h:3305:7: warning: variable 'mut_next' set but not used [-Wunused-but-set-variable]
 3305 |   int mut_next, index_next;
      |       ^
ctcbn.c:79:7: warning: unused variable 'verbose' [-Wunused-variable]
   79 |   int verbose = 0;
      |       ^~~~~~~
ctcbn.c:84:7: warning: unused variable 'GPS' [-Wunused-variable]
   84 |   int GPS = 0;
      |       ^~~
ctcbn.c:88:7: warning: unused variable 'c' [-Wunused-variable]
   88 |   int c = 0;
      |       ^
ctcbn.c:302:7: warning: unused variable 'error_flag' [-Wunused-variable]
  302 |   int error_flag = 0;
      |       ^~~~~~~~~~
ctcbn.c:303:7: warning: unused variable 'f_flag' [-Wunused-variable]
  303 |   int f_flag = 0;
      |       ^~~~~~
ctcbn.c:304:7: warning: variable 'e_flag' set but not used [-Wunused-but-set-variable]
  304 |   int e_flag = 0;
      |       ^
ctcbn.c:305:7: warning: unused variable 'gps_flag' [-Wunused-variable]
  305 |   int gps_flag = 0;
      |       ^~~~~~~~
ctcbn.c:306:7: warning: unused variable 'l_flag' [-Wunused-variable]
  306 |   int l_flag = 0;
      |       ^~~~~~
ctcbn.c:308:7: warning: unused variable 't_flag' [-Wunused-variable]
  308 |   int t_flag = 1;
      |       ^~~~~~
ctcbn.c:313:10: warning: unused variable 'T' [-Wunused-variable]
  313 |   double T = REAL(temp)[0];
      |          ^
ctcbn.c:314:7: warning: variable 'N_iter' set but not used [-Wunused-but-set-variable]
  314 |   int N_iter = 0;
      |       ^
ctcbn.c:319:7: warning: unused variable 'c' [-Wunused-variable]
  319 |   int c = 0;
      |       ^
22 warnings generated.
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I.  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c init.c -o init.o
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I.  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c queue.c -o queue.o
clang -arch arm64 -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o CBN2Path.so bcbn.o ctcbn.o init.o queue.o -L/opt/R/arm64/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.6/Resources/library/00LOCK-CBN2Path/00new/CBN2Path/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CBN2Path)

R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(CBN2Path)
> 
> test_check("CBN2Path")
chain: 1
0
chain: 2
0
chain: 3
0
chain: 4
0
       V1               V2                V3                 V4         
 Min.   :0.2129   Min.   :0.01959   Min.   :0.002318   Min.   :0.02855  
 1st Qu.:0.8081   1st Qu.:0.58062   1st Qu.:0.574373   1st Qu.:0.09653  
 Median :0.8997   Median :0.72689   Median :0.720739   Median :0.12271  
 Mean   :0.8672   Mean   :0.70587   Mean   :0.701044   Mean   :0.12589  
 3rd Qu.:0.9584   3rd Qu.:0.85348   3rd Qu.:0.848935   3rd Qu.:0.14952  
 Max.   :1.0000   Max.   :1.00000   Max.   :0.999984   Max.   :0.35786  
       V5         
 Min.   :-12.199  
 1st Qu.: -8.035  
 Median : -7.597  
 Mean   : -7.673  
 3rd Qu.: -7.190  
 Max.   : -6.507  
       V1               V2                 V3               V4         
 Min.   :0.1437   Min.   :0.004831   Min.   :0.0180   Min.   :0.02721  
 1st Qu.:0.8144   1st Qu.:0.576638   1st Qu.:0.5777   1st Qu.:0.09652  
 Median :0.9050   Median :0.720932   Median :0.7238   Median :0.12284  
 Mean   :0.8700   Mean   :0.703106   Mean   :0.7035   Mean   :0.12632  
 3rd Qu.:0.9595   3rd Qu.:0.849950   3rd Qu.:0.8506   3rd Qu.:0.15055  
 Max.   :1.0000   Max.   :0.999968   Max.   :0.9998   Max.   :0.37426  
       V5         
 Min.   :-12.703  
 1st Qu.: -8.018  
 Median : -7.575  
 Mean   : -7.654  
 3rd Qu.: -7.169  
 Max.   : -6.510  
       V1               V2                V3                 V4         
 Min.   :0.0998   Min.   :0.01197   Min.   :0.001842   Min.   :0.02301  
 1st Qu.:0.8106   1st Qu.:0.57818   1st Qu.:0.577918   1st Qu.:0.09699  
 Median :0.9034   Median :0.72405   Median :0.721428   Median :0.11932  
 Mean   :0.8690   Mean   :0.70464   Mean   :0.703004   Mean   :0.12506  
 3rd Qu.:0.9618   3rd Qu.:0.85347   3rd Qu.:0.849543   3rd Qu.:0.15031  
 Max.   :1.0000   Max.   :1.00000   Max.   :0.999996   Max.   :0.32515  
       V5         
 Min.   :-12.906  
 1st Qu.: -8.021  
 Median : -7.575  
 Mean   : -7.658  
 3rd Qu.: -7.166  
 Max.   : -6.522  
       V1                V2                V3                 V4         
 Min.   :0.08069   Min.   :0.01166   Min.   :0.001616   Min.   :0.01901  
 1st Qu.:0.81242   1st Qu.:0.57310   1st Qu.:0.572565   1st Qu.:0.09664  
 Median :0.90333   Median :0.71814   Median :0.719679   Median :0.12188  
 Mean   :0.86896   Mean   :0.70042   Mean   :0.699753   Mean   :0.12553  
 3rd Qu.:0.95957   3rd Qu.:0.84994   3rd Qu.:0.848724   3rd Qu.:0.15073  
 Max.   :0.99997   Max.   :0.99994   Max.   :0.999795   Max.   :0.31046  
       V5         
 Min.   :-11.798  
 1st Qu.: -8.045  
 Median : -7.594  
 Mean   : -7.671  
 3rd Qu.: -7.180  
 Max.   : -6.500  
[1] "Criterion: 1.00115007502599"
Potential scale reduction factors:

     Point est. Upper C.I.
[1,]          1          1
[2,]          1          1
[3,]          1          1
[4,]          1          1
[5,]          1          1

Multivariate psrf

1
[1] "##########################################"
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 9 ]

[ FAIL 0 | WARN 2 | SKIP 0 | PASS 9 ]
> 
> proc.time()
   user  system elapsed 
 41.097   0.678  43.420