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This page was generated on 2024-12-24 11:41 -0500 (Tue, 24 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4754
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4472
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4426
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4381
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4373
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 269/2274HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CARNIVAL 2.17.0  (landing page)
Attila Gabor
Snapshot Date: 2024-12-23 13:40 -0500 (Mon, 23 Dec 2024)
git_url: https://git.bioconductor.org/packages/CARNIVAL
git_branch: devel
git_last_commit: 153557f
git_last_commit_date: 2024-10-29 10:46:30 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  


CHECK results for CARNIVAL on palomino7

To the developers/maintainers of the CARNIVAL package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CARNIVAL.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: CARNIVAL
Version: 2.17.0
Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:CARNIVAL.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings CARNIVAL_2.17.0.tar.gz
StartedAt: 2024-12-23 22:54:32 -0500 (Mon, 23 Dec 2024)
EndedAt: 2024-12-23 22:55:46 -0500 (Mon, 23 Dec 2024)
EllapsedTime: 73.2 seconds
RetCode: 0
Status:   OK  
CheckDir: CARNIVAL.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:CARNIVAL.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings CARNIVAL_2.17.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/CARNIVAL.Rcheck'
* using R Under development (unstable) (2024-10-26 r87273 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'CARNIVAL/DESCRIPTION' ... OK
* this is package 'CARNIVAL' version '2.17.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CARNIVAL' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
checkSolverPathInSystem: no visible global function definition for
  'searchForSolver'
convergenceTextToTable: no visible binding for global variable '.'
convergenceTextToTable: no visible binding for global variable 'Gap'
convergenceTextToTable: no visible binding for global variable
  'Objective'
convergenceTextToTable: no visible binding for global variable 'Best
  Bound'
convergenceTextToTable: no visible binding for global variable 'index'
createInternalDataRepresentation: no visible global function definition
  for 'buildDataVector'
createInternalDataRepresentation: no visible global function definition
  for 'createVariables'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'nodes'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'nodesValue'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'solution'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'Node2Value'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'edgesUpValue'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'edgesDownValue'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'presents'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'Node1'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'Sign'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'Node2'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'Activity'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'nodesType'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'zeroActivity'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'activityUp'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'activityDown'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'UpAct'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'DownAct'
getSolutionMatrixGurobi: no visible global function definition for
  'read.csv2'
parseCplexLog: no visible binding for global variable '.'
prepareForCarnivalRun: no visible global function definition for
  'createLpFormulation'
processSolution: no visible global function definition for
  'exportIlpSolutionResultFromXml'
sendTaskToSolver: no visible global function definition for
  'transformVariables'
solveWithCbc: no visible global function definition for 'read.csv2'
solveWithCplex: no visible global function definition for 'read.delim'
timeStringToTable: no visible binding for global variable '.'
timeStringToTable: no visible binding for global variable 'ticks'
timeStringToTable: no visible binding for global variable 'Solutions'
Undefined global functions or variables:
  . Activity Best Bound DownAct Gap Node1 Node2 Node2Value Objective
  Sign Solutions UpAct activityDown activityUp buildDataVector
  createLpFormulation createVariables edgesDownValue edgesUpValue
  exportIlpSolutionResultFromXml index nodes nodesType nodesValue
  presents read.csv2 read.delim searchForSolver solution ticks
  transformVariables zeroActivity
Consider adding
  importFrom("utils", "read.csv2", "read.delim")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'E:/biocbuild/bbs-3.21-bioc/meat/CARNIVAL.Rcheck/00check.log'
for details.


Installation output

CARNIVAL.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL CARNIVAL
###
##############################################################################
##############################################################################


* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'CARNIVAL' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CARNIVAL)

Tests output

CARNIVAL.Rcheck/tests/testthat.Rout


R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(CARNIVAL)
> 
> test_check("CARNIVAL")
Automatic setup path for cplex solver is not support for Windows yet.
Test run finished successfully.

Attaching package: 'dplyr'

The following object is masked from 'package:testthat':

    matches

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

The following names changed in the network:
  user.defined.id mapped.id
1             I*1       I_1
2             N2-       N2_
3            <N1>     X_N1_
The following names changed in the network:
  user.defined.id mapped.id
1            *N*1     X_N_1
2             N+2       N_2
3             M1:       M1_
4             M1*       M1_
The following node names maps to the same ID:
  user.defined.id mapped.id
3             M1:       M1_
4             M1*       M1_
The following names changed in the network:
  user.defined.id mapped.id
1             I*1       I_1
2             N2-       N2_
3            <N1>     X_N1_
The following names changed in the network:
  user.defined.id mapped.id
1            *N*1     X_N_1
2             N+2       N_2
3             M1:       M1_
--- Start of the CARNIVAL pipeline ---
22:55:24 23.12.2024 Carnival flavour: vanilla
22:55:24 23.12.2024 Generating variables for lp problem
22:55:24 23.12.2024 Done: generating variables for lp problem
Saving preprocessed data.
Done: saving parsed data: ./test_model1/test5/parsedData_t22_55_24d23_12_2024n92.RData
22:55:24 23.12.2024 Generating formulation for LP problem
22:55:24 23.12.2024 Done: generating formulation for LP problem.
Saving LP file
Done: Saving LP file: ./test_model1/test5/lpFile_t22_55_24d23_12_2024n92.lp
22:55:24 23.12.2024 Solving LP problem
Parsing .lp file for lpSolve
Rows: 174 Columns: 1
-- Column specification --------------------------------------------------------
Delimiter: ","
chr (1): X1

i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
Done: parsing .lp file for lpSolve
22:55:25 23.12.2024 Done: solving LP problem.
22:55:25 23.12.2024 Getting the solution matrix
22:55:25 23.12.2024 Done: getting the solution matrix.
22:55:25 23.12.2024 Exporting solution matrix
22:55:25 23.12.2024 Done: exporting solution matrix.
Cleaning intermediate files
Done: cleaning
22:55:25 23.12.2024 All tasks finished.

--- End of the CARNIVAL pipeline --- 

 
--- Start of the CARNIVAL pipeline ---
22:55:25 23.12.2024 Carnival flavour: inverse
Perturbations are not provided, all parents nodes are added as potential perturbations.
22:55:25 23.12.2024 Generating variables for lp problem
22:55:25 23.12.2024 Done: generating variables for lp problem
Saving preprocessed data.
Done: saving parsed data: E:/biocbuild/bbs-3.21-bioc/meat/CARNIVAL.Rcheck/tests/testthat/work_lpsolve/work_lpsolve/parsedData_t22_55_25d23_12_2024n86.RData
22:55:25 23.12.2024 Generating formulation for LP problem
22:55:25 23.12.2024 Done: generating formulation for LP problem.
Saving LP file
Done: Saving LP file: E:/biocbuild/bbs-3.21-bioc/meat/CARNIVAL.Rcheck/tests/testthat/work_lpsolve/work_lpsolve/lpFile_t22_55_25d23_12_2024n86.lp
22:55:25 23.12.2024 Solving LP problem
Parsing .lp file for lpSolve
Rows: 142 Columns: 1
-- Column specification --------------------------------------------------------
Delimiter: ","
chr (1): X1

i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
Done: parsing .lp file for lpSolve
22:55:26 23.12.2024 Done: solving LP problem.
22:55:26 23.12.2024 Getting the solution matrix
22:55:26 23.12.2024 Done: getting the solution matrix.
22:55:26 23.12.2024 Exporting solution matrix
22:55:26 23.12.2024 Done: exporting solution matrix.
Cleaning intermediate files
Done: cleaning
22:55:26 23.12.2024 All tasks finished.

--- End of the CARNIVAL pipeline --- 

--- Start of the CARNIVAL pipeline ---
22:55:26 23.12.2024 Carnival flavour: vanilla
22:55:26 23.12.2024 Generating variables for lp problem
22:55:26 23.12.2024 Done: generating variables for lp problem
Saving preprocessed data.
Done: saving parsed data: ./test_model1/test1//parsedData_t22_55_26d23_12_2024n28.RData
22:55:26 23.12.2024 Generating formulation for LP problem
22:55:26 23.12.2024 Done: generating formulation for LP problem.
Saving LP file
Done: Saving LP file: ./test_model1/test1//lpFile_t22_55_26d23_12_2024n28.lp
22:55:26 23.12.2024 Solving LP problem
Parsing .lp file for lpSolve
Rows: 108 Columns: 1
-- Column specification --------------------------------------------------------
Delimiter: ","
chr (1): X1

i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
Done: parsing .lp file for lpSolve
22:55:26 23.12.2024 Done: solving LP problem.
22:55:26 23.12.2024 Getting the solution matrix
22:55:26 23.12.2024 Done: getting the solution matrix.
22:55:26 23.12.2024 Exporting solution matrix
22:55:26 23.12.2024 Done: exporting solution matrix.
Cleaning intermediate files
Done: cleaning
22:55:26 23.12.2024 All tasks finished.

--- End of the CARNIVAL pipeline --- 

--- Start of the CARNIVAL pipeline ---
22:55:26 23.12.2024 Carnival flavour: vanilla
22:55:26 23.12.2024 Generating variables for lp problem
22:55:26 23.12.2024 Done: generating variables for lp problem
Saving preprocessed data.
Done: saving parsed data: ./test_model1/test2//parsedData_t22_55_26d23_12_2024n14.RData
22:55:26 23.12.2024 Generating formulation for LP problem
22:55:26 23.12.2024 Done: generating formulation for LP problem.
Saving LP file
Done: Saving LP file: ./test_model1/test2//lpFile_t22_55_26d23_12_2024n14.lp
22:55:26 23.12.2024 Solving LP problem
Parsing .lp file for lpSolve
Rows: 108 Columns: 1
-- Column specification --------------------------------------------------------
Delimiter: ","
chr (1): X1

i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
Done: parsing .lp file for lpSolve
22:55:26 23.12.2024 Done: solving LP problem.
22:55:26 23.12.2024 Getting the solution matrix
22:55:26 23.12.2024 Done: getting the solution matrix.
22:55:26 23.12.2024 Exporting solution matrix
22:55:26 23.12.2024 Done: exporting solution matrix.
Cleaning intermediate files
Done: cleaning
22:55:26 23.12.2024 All tasks finished.

--- End of the CARNIVAL pipeline --- 

--- Start of the CARNIVAL pipeline ---
22:55:26 23.12.2024 Carnival flavour: vanilla
22:55:26 23.12.2024 Generating variables for lp problem
22:55:26 23.12.2024 Done: generating variables for lp problem
Saving preprocessed data.
Done: saving parsed data: ./test_model1/test3//parsedData_t22_55_26d23_12_2024n13.RData
22:55:26 23.12.2024 Generating formulation for LP problem
22:55:26 23.12.2024 Done: generating formulation for LP problem.
Saving LP file
Done: Saving LP file: ./test_model1/test3//lpFile_t22_55_26d23_12_2024n13.lp
22:55:26 23.12.2024 Solving LP problem
Parsing .lp file for lpSolve
Rows: 108 Columns: 1
-- Column specification --------------------------------------------------------
Delimiter: ","
chr (1): X1

i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
Done: parsing .lp file for lpSolve
22:55:27 23.12.2024 Done: solving LP problem.
22:55:27 23.12.2024 Getting the solution matrix
22:55:27 23.12.2024 Done: getting the solution matrix.
22:55:27 23.12.2024 Exporting solution matrix
22:55:27 23.12.2024 Done: exporting solution matrix.
Cleaning intermediate files
Done: cleaning
22:55:27 23.12.2024 All tasks finished.

--- End of the CARNIVAL pipeline --- 

--- Start of the CARNIVAL pipeline ---
22:55:27 23.12.2024 Carnival flavour: vanilla
22:55:27 23.12.2024 Generating variables for lp problem
22:55:27 23.12.2024 Done: generating variables for lp problem
Saving preprocessed data.
Done: saving parsed data: ./test_model1/test4//parsedData_t22_55_27d23_12_2024n14.RData
22:55:27 23.12.2024 Generating formulation for LP problem
22:55:27 23.12.2024 Done: generating formulation for LP problem.
Saving LP file
Done: Saving LP file: ./test_model1/test4//lpFile_t22_55_27d23_12_2024n14.lp
22:55:27 23.12.2024 Solving LP problem
Parsing .lp file for lpSolve
Rows: 121 Columns: 1
-- Column specification --------------------------------------------------------
Delimiter: ","
chr (1): X1

i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
Done: parsing .lp file for lpSolve
22:55:27 23.12.2024 Done: solving LP problem.
22:55:27 23.12.2024 Getting the solution matrix
22:55:27 23.12.2024 Done: getting the solution matrix.
22:55:27 23.12.2024 Exporting solution matrix
22:55:27 23.12.2024 Done: exporting solution matrix.
Cleaning intermediate files
Done: cleaning
22:55:27 23.12.2024 All tasks finished.

--- End of the CARNIVAL pipeline --- 

--- Start of the CARNIVAL pipeline ---
22:55:27 23.12.2024 Carnival flavour: vanilla
22:55:27 23.12.2024 Generating variables for lp problem
22:55:27 23.12.2024 Done: generating variables for lp problem
Saving preprocessed data.
Done: saving parsed data: ./test_model1/test5/parsedData_t22_55_27d23_12_2024n71.RData
22:55:27 23.12.2024 Generating formulation for LP problem
22:55:27 23.12.2024 Done: generating formulation for LP problem.
Saving LP file
Done: Saving LP file: ./test_model1/test5/lpFile_t22_55_27d23_12_2024n71.lp
22:55:27 23.12.2024 Solving LP problem
Parsing .lp file for lpSolve
Rows: 174 Columns: 1
-- Column specification --------------------------------------------------------
Delimiter: ","
chr (1): X1

i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
Done: parsing .lp file for lpSolve
22:55:27 23.12.2024 Done: solving LP problem.
22:55:27 23.12.2024 Getting the solution matrix
22:55:27 23.12.2024 Done: getting the solution matrix.
22:55:27 23.12.2024 Exporting solution matrix
22:55:27 23.12.2024 Done: exporting solution matrix.
Cleaning intermediate files
Done: cleaning
22:55:27 23.12.2024 All tasks finished.

--- End of the CARNIVAL pipeline --- 

--- Start of the CARNIVAL pipeline ---
22:55:28 23.12.2024 Carnival flavour: vanilla
22:55:28 23.12.2024 Generating variables for lp problem
22:55:28 23.12.2024 Done: generating variables for lp problem
Saving preprocessed data.
Done: saving parsed data: ./test_model1/testweight2//parsedData_t22_55_28d23_12_2024n41.RData
22:55:28 23.12.2024 Generating formulation for LP problem
22:55:28 23.12.2024 Done: generating formulation for LP problem.
Saving LP file
Done: Saving LP file: ./test_model1/testweight2//lpFile_t22_55_28d23_12_2024n41.lp
22:55:28 23.12.2024 Solving LP problem
Parsing .lp file for lpSolve
Rows: 108 Columns: 1
-- Column specification --------------------------------------------------------
Delimiter: ","
chr (1): X1

i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
Done: parsing .lp file for lpSolve
22:55:28 23.12.2024 Done: solving LP problem.
22:55:28 23.12.2024 Getting the solution matrix
22:55:28 23.12.2024 Done: getting the solution matrix.
22:55:28 23.12.2024 Exporting solution matrix
22:55:28 23.12.2024 Done: exporting solution matrix.
Cleaning intermediate files
Done: cleaning
22:55:28 23.12.2024 All tasks finished.

--- End of the CARNIVAL pipeline --- 

--- Start of the CARNIVAL pipeline ---
22:55:28 23.12.2024 Carnival flavour: vanilla
22:55:28 23.12.2024 Generating variables for lp problem
22:55:28 23.12.2024 Done: generating variables for lp problem
Saving preprocessed data.
Done: saving parsed data: ./test_model1/testweight3//parsedData_t22_55_28d23_12_2024n91.RData
22:55:28 23.12.2024 Generating formulation for LP problem
22:55:28 23.12.2024 Done: generating formulation for LP problem.
Saving LP file
Done: Saving LP file: ./test_model1/testweight3//lpFile_t22_55_28d23_12_2024n91.lp
22:55:28 23.12.2024 Solving LP problem
Parsing .lp file for lpSolve
Rows: 108 Columns: 1
-- Column specification --------------------------------------------------------
Delimiter: ","
chr (1): X1

i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
Done: parsing .lp file for lpSolve
22:55:28 23.12.2024 Done: solving LP problem.
22:55:28 23.12.2024 Getting the solution matrix
22:55:28 23.12.2024 Done: getting the solution matrix.
22:55:28 23.12.2024 Exporting solution matrix
22:55:28 23.12.2024 Done: exporting solution matrix.
Cleaning intermediate files
Done: cleaning
22:55:28 23.12.2024 All tasks finished.

--- End of the CARNIVAL pipeline --- 

--- Start of the CARNIVAL pipeline ---
22:55:28 23.12.2024 Carnival flavour: vanilla
22:55:28 23.12.2024 Generating variables for lp problem
22:55:28 23.12.2024 Done: generating variables for lp problem
Saving preprocessed data.
Done: saving parsed data: ./test_model1/testweight4//parsedData_t22_55_28d23_12_2024n45.RData
22:55:28 23.12.2024 Generating formulation for LP problem
22:55:28 23.12.2024 Done: generating formulation for LP problem.
Saving LP file
Done: Saving LP file: ./test_model1/testweight4//lpFile_t22_55_28d23_12_2024n45.lp
22:55:28 23.12.2024 Solving LP problem
Parsing .lp file for lpSolve
Rows: 108 Columns: 1
-- Column specification --------------------------------------------------------
Delimiter: ","
chr (1): X1

i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
Done: parsing .lp file for lpSolve
22:55:28 23.12.2024 Done: solving LP problem.
22:55:28 23.12.2024 Getting the solution matrix
22:55:28 23.12.2024 Done: getting the solution matrix.
22:55:28 23.12.2024 Exporting solution matrix
22:55:29 23.12.2024 Done: exporting solution matrix.
Cleaning intermediate files
Done: cleaning
22:55:29 23.12.2024 All tasks finished.

--- End of the CARNIVAL pipeline --- 

[ FAIL 0 | WARN 0 | SKIP 14 | PASS 135 ]

══ Skipped tests (14) ══════════════════════════════════════════════════════════
• !file.exists(cbcPath) is TRUE (1): 'test-set_solver_path.R:19:5'
• file.exists(cbcPath) is not TRUE (4): 'test_cbc_small_models.R:78:5',
  'test_cbc_small_models.R:131:5', 'test_cbc_small_models.R:185:5',
  'test_cbc_small_models.R:278:5'
• file.exists(cplexPath) is not TRUE (5): 'test_cplex_small_models.R:82:5',
  'test_cplex_small_models.R:136:5', 'test_cplex_small_models.R:194:5',
  'test_cplex_small_models.R:288:5', 'test_inverseCarnival.R:131:5'
• file.exists(gurobiPath) is not TRUE (4): 'test_gurobi_small_models.R:82:5',
  'test_gurobi_small_models.R:134:5', 'test_gurobi_small_models.R:188:5',
  'test_gurobi_small_models.R:279:5'

[ FAIL 0 | WARN 0 | SKIP 14 | PASS 135 ]
> 
> proc.time()
   user  system elapsed 
   5.70    1.09    8.20 

Example timings

CARNIVAL.Rcheck/CARNIVAL-Ex.timings

nameusersystemelapsed
checkOptionsValidity0.000.000.01
defaultCbcSolveCarnivalOptions000
defaultCplexCarnivalOptions000
defaultCplexSpecificOptions000
defaultLpSolveCarnivalOptions000
generateLpFileCarnival0.000.010.11
isInputValidCarnival000
runCARNIVAL000
runFromLpCarnival000
runInverseCarnival000
runVanillaCarnival0.000.020.02
setCarnivalOptions000
suggestedCbcSpecificOptions000
suggestedCplexSpecificOptions000