Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2024-12-24 11:46 -0500 (Tue, 24 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4373 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 246/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
BufferedMatrixMethods 1.71.1 (landing page) Ben Bolstad
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the BufferedMatrixMethods package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BufferedMatrixMethods.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: BufferedMatrixMethods |
Version: 1.71.1 |
Command: /home/biocbuild/R/R/bin/R CMD INSTALL BufferedMatrixMethods |
StartedAt: 2024-12-23 19:29:33 -0000 (Mon, 23 Dec 2024) |
EndedAt: 2024-12-23 19:30:03 -0000 (Mon, 23 Dec 2024) |
EllapsedTime: 30.6 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL BufferedMatrixMethods ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’ * installing *source* package ‘BufferedMatrixMethods’ ... ** using staged installation ** libs using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BufferedMatrix/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c init_package.c -o init_package.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BufferedMatrix/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c preprocess_bm.c -o preprocess_bm.o preprocess_bm.c: In function ‘bm_rma_bg_correct’: preprocess_bm.c:344:7: warning: unused variable ‘i’ [-Wunused-variable] 344 | int i,j; | ^ preprocess_bm.c: In function ‘R_bm_rma_bg_correct’: preprocess_bm.c:378:7: warning: unused variable ‘current_mode’ [-Wunused-variable] 378 | int current_mode; | ^~~~~~~~~~~~ preprocess_bm.c: In function ‘R_bm_quantile_normalize’: preprocess_bm.c:593:7: warning: unused variable ‘current_mode’ [-Wunused-variable] 593 | int current_mode; | ^~~~~~~~~~~~ preprocess_bm.c: In function ‘do_RMA_buffmat’: preprocess_bm.c:924:7: warning: variable ‘first_ind’ set but not used [-Wunused-but-set-variable] 924 | int first_ind; | ^~~~~~~~~ preprocess_bm.c: In function ‘R_bm_rma_bg_correct_quantile_normalize’: preprocess_bm.c:1151:7: warning: unused variable ‘current_mode’ [-Wunused-variable] 1151 | int current_mode; | ^~~~~~~~~~~~ preprocess_bm.c: At top level: preprocess_bm.c:453:12: warning: ‘min’ defined but not used [-Wunused-function] 453 | static int min(int x1,int x2){ | ^~~ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o BufferedMatrixMethods.so init_package.o preprocess_bm.o -L/home/biocbuild/R/R/lib -lR installing to /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/00LOCK-BufferedMatrixMethods/00new/BufferedMatrixMethods/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BufferedMatrixMethods)