Sean Davis
| Snapshot Date: 2026-05-18 13:45 -0400 (Mon, 18 May 2026) |
| git_url: https://git.bioconductor.org/packages/BiocPkgTools |
| git_branch: devel |
| git_last_commit: 16b8797 |
| git_last_commit_date: 2026-05-14 18:33:36 -0400 (Thu, 14 May 2026) |
| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-19 12:54 -0400 (Tue, 19 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4898 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-05-01 r89994) -- "Because it was There" | 4617 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 209/2377 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BiocPkgTools 1.31.6 (landing page) Sean Davis
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | ||||||||||
| See other builds for BiocPkgTools in R Universe. | ||||||||||||||
|
To the developers/maintainers of the BiocPkgTools package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocPkgTools.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BiocPkgTools |
| Version: 1.31.6 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocPkgTools |
| StartedAt: 2026-05-18 17:23:05 -0400 (Mon, 18 May 2026) |
| EndedAt: 2026-05-18 17:24:59 -0400 (Mon, 18 May 2026) |
| EllapsedTime: 113.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocPkgTools
###
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* checking for file ‘BiocPkgTools/DESCRIPTION’ ... OK
* preparing ‘BiocPkgTools’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘BiocPkgTools.Rmd’ using rmarkdown
Quitting from BiocPkgTools.Rmd:61-64 [biocBuildReport]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `bfcrpath()`:
! not all 'rnames' found or unique.
---
Backtrace:
▆
1. ├─utils::head(biocBuildReport())
2. └─BiocPkgTools::biocBuildReport()
3. └─BiocPkgTools::biocBuildStatusDB(version, pkgType)
4. └─base::lapply(...)
5. └─BiocPkgTools (local) FUN(X[[i]], ...)
6. └─BiocPkgTools:::.cache_url_file(url)
7. ├─BiocFileCache::bfcrpath(...)
8. └─BiocFileCache::bfcrpath(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'BiocPkgTools.Rmd' failed with diagnostics:
not all 'rnames' found or unique.
--- failed re-building ‘BiocPkgTools.Rmd’
SUMMARY: processing the following file failed:
‘BiocPkgTools.Rmd’
Error: Vignette re-building failed.
Execution halted