Martin Morgan
| Snapshot Date: 2024-11-24 13:40 -0500 (Sun, 24 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/BiocParallel |
| git_branch: devel |
| git_last_commit: 0f688b6 |
| git_last_commit_date: 2024-10-29 09:43:33 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-11-25 11:38 -0500 (Mon, 25 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4748 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4459 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4349 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 188/2272 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BiocParallel 1.41.0 (landing page) Martin Morgan
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the BiocParallel package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocParallel.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BiocParallel |
| Version: 1.41.0 |
| Command: rm -rf BiocParallel.buildbin-libdir && mkdir BiocParallel.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=BiocParallel.buildbin-libdir BiocParallel_1.41.0.tar.gz |
| StartedAt: 2024-11-25 06:38:36 -0500 (Mon, 25 Nov 2024) |
| EndedAt: 2024-11-25 06:41:25 -0500 (Mon, 25 Nov 2024) |
| EllapsedTime: 169.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: BiocParallel_1.41.0.zip |
| PackageFileSize: 1.863 MiB |
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### Running command:
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### rm -rf BiocParallel.buildbin-libdir && mkdir BiocParallel.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=BiocParallel.buildbin-libdir BiocParallel_1.41.0.tar.gz
###
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* installing *source* package 'BiocParallel' ...
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.3.0'
using C++11
g++ -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/BH/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/cpp11/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cpp11.cpp -o cpp11.o
g++ -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/BH/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/cpp11/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ipcmutex.cpp -o ipcmutex.o
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
from E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
from E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/mpl/apply.hpp:24,
from E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/mpl/aux_/fold_impl.hpp:19,
from E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/mpl/fold.hpp:20,
from E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/mpl/remove_if.hpp:18,
from E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/mpl/remove.hpp:18,
from E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/function_types/components.hpp:44,
from E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/function_types/is_member_function_pointer.hpp:14,
from E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/tti/detail/dmem_fun.hpp:10,
from E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/tti/has_member_function.hpp:15,
from E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:20,
from E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
from ipcmutex.cpp:3:
E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
195 | assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
| -
195 | assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
| -
E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
E:/biocbuild/bbs-3.21-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| -
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
| -
g++ -shared -s -static-libgcc -o BiocParallel.dll tmp.def cpp11.o ipcmutex.o -lbcrypt -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.21-bioc/meat/BiocParallel.buildbin-libdir/00LOCK-BiocParallel/00new/BiocParallel/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'BiocParallel' as BiocParallel_1.41.0.zip
* DONE (BiocParallel)