Multiple platform build/check report for BioC 3.22 - BUILD results for BiocBook on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4749
palomino8	Windows Server 2022 Datacenter	x64	4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six"	4511
lconway	macOS 12.7.1 Monterey	x86_64	4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six"	4548
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six"	4489
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4455
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for BiocBook on lconway

To the developers/maintainers of the BiocBook package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocBook.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: BiocBook

Version: 1.7.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocBook

StartedAt: 2025-05-19 16:05:15 -0400 (Mon, 19 May 2025)

EndedAt: 2025-05-19 16:05:45 -0400 (Mon, 19 May 2025)

EllapsedTime: 29.9 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocBook
###
##############################################################################
##############################################################################


* checking for file ‘BiocBook/DESCRIPTION’ ... OK
* preparing ‘BiocBook’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BiocBook.Rmd’ using rmarkdown

Quitting from BiocBook.Rmd:63-68 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection to 'http://rpkg-api.gepuro.net/rpkg?q=myNewBook'
---
Backtrace:
     ▆
  1. └─BiocBook::init("myNewBook", .local = TRUE)
  2.   └─BiocBook:::.preflight_checks(...)
  3.     ├─base::tryCatch(...)
  4.     │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  5.     └─available::available(name = new_package, browse = FALSE)
  6.       └─available::available_on_github(name)
  7.         ├─available:::gh_pkg(name)
  8.         │ ├─base::withVisible(eval(mc, parent.frame()))
  9.         │ └─base::eval(mc, parent.frame())
 10.         │   └─base::eval(mc, parent.frame())
 11.         └─available (local) `<fn>`(pkg = name)
 12.           └─jsonlite::fromJSON(...)
 13.             └─jsonlite:::parse_and_simplify(...)
 14.               └─jsonlite:::parseJSON(txt, bigint_as_char)
 15.                 └─jsonlite:::parse_con(txt, bigint_as_char)
 16.                   ├─base::open(con, "rb")
 17.                   └─base::open.connection(con, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'BiocBook.Rmd' failed with diagnostics:
cannot open the connection to 'http://rpkg-api.gepuro.net/rpkg?q=myNewBook'
--- failed re-building ‘BiocBook.Rmd’

SUMMARY: processing the following file failed:
  ‘BiocBook.Rmd’

Error: Vignette re-building failed.
Execution halted