Jitao David Zhang
| Snapshot Date: 2024-11-20 13:40 -0500 (Wed, 20 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/BioQC |
| git_branch: devel |
| git_last_commit: 33cb26a |
| git_last_commit_date: 2024-10-29 10:05:38 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-11-21 11:33 -0500 (Thu, 21 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4742 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4456 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 214/2270 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BioQC 1.35.0 (landing page) Jitao David Zhang
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the BioQC package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BioQC.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BioQC |
| Version: 1.35.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL BioQC |
| StartedAt: 2024-11-20 15:05:05 -0500 (Wed, 20 Nov 2024) |
| EndedAt: 2024-11-20 15:05:28 -0500 (Wed, 20 Nov 2024) |
| EllapsedTime: 23.2 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL BioQC
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘BioQC’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG `/home/biocbuild/bbs-3.21-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c gini.c -o gini.o
gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG `/home/biocbuild/bbs-3.21-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c init.c -o init.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG `/home/biocbuild/bbs-3.21-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -DR_NO_REMAP -c read_gmt.cpp -o read_gmt.o
gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG `/home/biocbuild/bbs-3.21-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c stat_rank.c -o stat_rank.o
gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG `/home/biocbuild/bbs-3.21-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c wmw_test.c -o wmw_test.o
wmw_test.c: In function ‘wmw_test_list’:
wmw_test.c:118: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
118 | #pragma omp parallel for
|
wmw_test.c: In function ‘wmw_test’:
wmw_test.c:168: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
168 | #pragma omp parallel for
|
wmw_test.c: In function ‘signed_wmw_test_list’:
wmw_test.c:201: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
201 | #pragma omp parallel for
|
wmw_test.c: In function ‘signed_wmw_test’:
wmw_test.c:270: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
270 | #pragma omp parallel for
|
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o BioQC.so gini.o init.o read_gmt.o stat_rank.o wmw_test.o -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.21-bioc/R/site-library/00LOCK-BioQC/00new/BioQC/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BioQC)