Multiple platform build/check report for BioC 3.22 - BUILD results for BgeeCall on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4819
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4597
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4539
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4536
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for BgeeCall on lconway

To the developers/maintainers of the BgeeCall package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BgeeCall.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: BgeeCall

Version: 1.25.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BgeeCall

StartedAt: 2025-08-20 16:05:24 -0400 (Wed, 20 Aug 2025)

EndedAt: 2025-08-20 16:16:52 -0400 (Wed, 20 Aug 2025)

EllapsedTime: 687.8 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BgeeCall
###
##############################################################################
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* checking for file ‘BgeeCall/DESCRIPTION’ ... OK
* preparing ‘BgeeCall’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘bgeecall-manual.Rmd’ using rmarkdown
trying URL 'https://www.bgee.org/ftp/intergenic/1.0/ref_intergenic/6239_intergenic.fa.gz'
Content type 'application/x-gzip' length 4054193 bytes (3.9 MB)
==================================================
downloaded 3.9 MB


Quitting from bgeecall-manual.Rmd:253-258 [unnamed-chunk-16]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `listIntergenicReleases()`:
! File describing intergenic releases could not be downloaded 
from FTP.
---
Backtrace:
    ▆
 1. └─methods::new("BgeeMetadata", intergenic_release = "0.1")
 2.   ├─methods::initialize(value, ...)
 3.   └─BgeeCall (local) initialize(value, ...)
 4.     └─BgeeCall:::listIntergenicReleases(removeFile = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'bgeecall-manual.Rmd' failed with diagnostics:
File describing intergenic releases could not be downloaded 
from FTP.
--- failed re-building ‘bgeecall-manual.Rmd’

SUMMARY: processing the following file failed:
  ‘bgeecall-manual.Rmd’

Error: Vignette re-building failed.
Execution halted