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This page was generated on 2025-01-24 11:40 -0500 (Fri, 24 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 4609
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" 4393
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 3839
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 3835
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4408
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 122/2286HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BadRegionFinder 1.35.0  (landing page)
Sarah Sandmann
Snapshot Date: 2025-01-23 13:40 -0500 (Thu, 23 Jan 2025)
git_url: https://git.bioconductor.org/packages/BadRegionFinder
git_branch: devel
git_last_commit: 7025a46
git_last_commit_date: 2024-10-29 10:09:31 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for BadRegionFinder on lconway

To the developers/maintainers of the BadRegionFinder package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BadRegionFinder.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BadRegionFinder
Version: 1.35.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BadRegionFinder
StartedAt: 2025-01-23 15:44:20 -0500 (Thu, 23 Jan 2025)
EndedAt: 2025-01-23 15:45:29 -0500 (Thu, 23 Jan 2025)
EllapsedTime: 69.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BadRegionFinder
###
##############################################################################
##############################################################################


* checking for file ‘BadRegionFinder/DESCRIPTION’ ... OK
* preparing ‘BadRegionFinder’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘BadRegionFinder.Rnw’ using Sweave
Determine Coverage
Sample Test2_454
Sample Test2_ion
Determine target bases
Combine Information
Chromosome: 1
Chromosome: 2
Chromosome: 3
Chromosome: 4
Chromosome: 5
Chromosome: 6
Chromosome: 7
Chromosome: 8
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Chromosome: 15
Chromosome: 16
Chromosome: 17
Chromosome: 18
Chromosome: 19
Chromosome: 20
Chromosome: 21
Chromosome: 22
Chromosome: X
Chromosome: Y
Chromosome: MT
Analyzing Chromosome 1
Analyzing Chromosome 2
Analyzing Chromosome 3
Analyzing Chromosome 4
Analyzing Chromosome 5
Analyzing Chromosome 6
Analyzing Chromosome 7
Analyzing Chromosome 8
Analyzing Chromosome 9
Analyzing Chromosome 10
Analyzing Chromosome 11
Analyzing Chromosome 12
Analyzing Chromosome 13
Analyzing Chromosome 14
Analyzing Chromosome 15
Analyzing Chromosome 16
Analyzing Chromosome 17
Analyzing Chromosome 18
Analyzing Chromosome 19
Analyzing Chromosome 20
Analyzing Chromosome 21
Analyzing Chromosome 22
Analyzing Chromosome 23
Analyzing Chromosome 24
Analyzing Chromosome 25
Analyze Chromosome 1
Analyze Chromosome 2
Analyze Chromosome 3
Analyze Chromosome 4
Analyze Chromosome 5
Analyze Chromosome 6
Analyze Chromosome 7
Analyze Chromosome 8
Analyze Chromosome 9
Analyze Chromosome 10
Analyze Chromosome 11
Analyze Chromosome 12
Analyze Chromosome 13
Analyze Chromosome 14
Analyze Chromosome 15
Analyze Chromosome 16
Analyze Chromosome 17
Analyze Chromosome 18
Analyze Chromosome 19
Analyze Chromosome 20
Analyze Chromosome 21
Analyze Chromosome 22
Analyze Chromosome 23
Analyze Chromosome 24
Analyze Chromosome 25

Error: processing vignette 'BadRegionFinder.Rnw' failed with diagnostics:
 chunk 10 (label = 10) 
Error in curl::curl_parse_url(url, baseurl = base_url, decode = FALSE) : 
  Failed to parse URL: Bad scheme

--- failed re-building ‘BadRegionFinder.Rnw’

SUMMARY: processing the following file failed:
  ‘BadRegionFinder.Rnw’

Error: Vignette re-building failed.
Execution halted