Multiple platform build/check report for BioC 3.24 - BUILD results for AnnotationForge on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 RC (2026-04-17 r89917) -- "Because it was There"	4898
kjohnson3	macOS 13.7.7 Ventura	arm64	4.6.0 Patched (2026-05-01 r89994) -- "Because it was There"	4617
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for AnnotationForge on kjohnson3

To the developers/maintainers of the AnnotationForge package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AnnotationForge.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: AnnotationForge

Version: 1.55.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationForge

StartedAt: 2026-05-18 17:11:56 -0400 (Mon, 18 May 2026)

EndedAt: 2026-05-18 17:25:07 -0400 (Mon, 18 May 2026)

EllapsedTime: 791.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationForge
###
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* checking for file ‘AnnotationForge/DESCRIPTION’ ... OK
* preparing ‘AnnotationForge’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘makeProbePackage.Rmd’ using rmarkdown

See
  ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmptMQXb3/hgu95av2probe.Rcheck/00check.log’
for details.

Warning in if (length(i) > 1) stop("You must not have more than one appendix title") :
  closing unused connection 4 (/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/Rtmp0HlXsz/Rinst2a8f3ac4e371/AnnotationForge/extdata/HG-U95Av2_probe_tab.gz)
--- finished re-building ‘makeProbePackage.Rmd’

--- re-building ‘MakingNewAnnotationPackages.Rnw’ using knitr

Quitting from MakingNewAnnotationPackages.Rnw:204-212 [URI Example]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `BiocFileCache::bfcrpath()`:
! not all 'rnames' found or unique.
---
Backtrace:
    x
 1. \-global .get_file(fullUri)
 2.   +-BiocFileCache::bfcrpath(...)
 3.   \-BiocFileCache::bfcrpath(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MakingNewAnnotationPackages.Rnw' failed with diagnostics:
not all 'rnames' found or unique.
--- failed re-building ‘MakingNewAnnotationPackages.Rnw’

--- re-building ‘MakingNewOrganismPackages.Rmd’ using knitr
--- finished re-building ‘MakingNewOrganismPackages.Rmd’

--- re-building ‘SQLForge.Rnw’ using knitr
Warning: call dbDisconnect() when finished working with a connection
--- finished re-building ‘SQLForge.Rnw’

SUMMARY: processing the following file failed:
  ‘MakingNewAnnotationPackages.Rnw’

Error: Vignette re-building failed.
Execution halted