| Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2024-11-25 11:37 -0500 (Mon, 25 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4748 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4459 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4349 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 87/2272 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| AnVILWorkflow 1.7.1 (landing page) Sehyun Oh
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
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To the developers/maintainers of the AnVILWorkflow package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AnVILWorkflow.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: AnVILWorkflow |
| Version: 1.7.1 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnVILWorkflow |
| StartedAt: 2024-11-24 16:04:50 -0500 (Sun, 24 Nov 2024) |
| EndedAt: 2024-11-24 16:04:57 -0500 (Sun, 24 Nov 2024) |
| EllapsedTime: 6.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnVILWorkflow
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* checking for file ‘AnVILWorkflow/DESCRIPTION’ ... OK
* preparing ‘AnVILWorkflow’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘salmon.Rmd’ using rmarkdown
Quitting from lines 17-21 [setup] (salmon.Rmd)
Error: processing vignette 'salmon.Rmd' failed with diagnostics:
'AnVIL::gcloud_exists' is defunct.
Use 'AnVILGCP::gcloud_exists' instead.
See help('gcloud-defunct').
--- failed re-building ‘salmon.Rmd’
SUMMARY: processing the following file failed:
‘salmon.Rmd’
Error: Vignette re-building failed.
Execution halted