Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-08-22 12:03 -0400 (Fri, 22 Aug 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4821 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4599 |
kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4541 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4539 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 109/2319 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ASURAT 1.13.0 (landing page) Keita Iida
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | TIMEOUT | skipped | ||||||||||
To the developers/maintainers of the ASURAT package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ASURAT.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: ASURAT |
Version: 1.13.0 |
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 ASURAT |
StartedAt: 2025-08-21 16:23:21 -0400 (Thu, 21 Aug 2025) |
EndedAt: 2025-08-21 16:34:17 -0400 (Thu, 21 Aug 2025) |
EllapsedTime: 655.7 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 ASURAT ### ############################################################################## ############################################################################## * checking for file ‘ASURAT/DESCRIPTION’ ... OK * preparing ‘ASURAT’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘ASURAT.Rmd’ using rmarkdown | | | 0% | |======================================================================| 100% 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| | | | 0% | |======================================================================| 100% 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| | | | 0% | |======================================================================| 100% Quitting from ASURAT.Rmd:525-540 [unnamed-chunk-35] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! Caught an unexpected error of class FutureLaunchError when trying to launch future ('future_lapply-1') on backend of class SequentialFutureBackend. The reason was: future::evalFuture() failed on nebbiolo2 (pid 1217579) at 2025-08-21T16:34:16. Using package 'future' v1.67.0. Possible other reasons: bad binding access --- Backtrace: ▆ 1. ├─Seurat::FindNeighbors(surt, reduction = "pca", dims = ds[[i]]) 2. └─Seurat:::FindNeighbors.Seurat(surt, reduction = "pca", dims = ds[[i]]) 3. ├─Seurat::FindNeighbors(...) 4. └─Seurat:::FindNeighbors.default(...) 5. └─Seurat:::NNHelper(...) 6. ├─base::do.call(what = "AnnoyNN", args = args) 7. └─Seurat:::AnnoyNN(...) 8. └─Seurat:::AnnoySearch(...) 9. └─future.apply::future_lapply(...) 10. └─future.apply:::future_xapply(...) 11. └─base::tryCatch(...) 12. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 13. └─base (local) tryCatchOne(...) 14. └─value[[3L]](cond) 15. └─future.apply:::onError(e, futures = fs, debug = debug) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'ASURAT.Rmd' failed with diagnostics: Caught an unexpected error of class FutureLaunchError when trying to launch future ('future_lapply-1') on backend of class SequentialFutureBackend. The reason was: future::evalFuture() failed on nebbiolo2 (pid 1217579) at 2025-08-21T16:34:16. Using package 'future' v1.67.0. Possible other reasons: bad binding access --- failed re-building ‘ASURAT.Rmd’ SUMMARY: processing the following file failed: ‘ASURAT.Rmd’ Error: Vignette re-building failed. Execution halted