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This page was generated on 2025-10-13 12:04 -0400 (Mon, 13 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4864
lconwaymacOS 12.7.1 Montereyx86_644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4652
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4597
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4586
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 110/2346HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ASURAT 1.13.0  (landing page)
Keita Iida
Snapshot Date: 2025-10-12 13:45 -0400 (Sun, 12 Oct 2025)
git_url: https://git.bioconductor.org/packages/ASURAT
git_branch: devel
git_last_commit: d4254d0
git_last_commit_date: 2025-04-15 12:48:03 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    TIMEOUT  skipped

BUILD results for ASURAT on lconway

To the developers/maintainers of the ASURAT package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ASURAT.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ASURAT
Version: 1.13.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ASURAT
StartedAt: 2025-10-12 16:01:55 -0400 (Sun, 12 Oct 2025)
EndedAt: 2025-10-12 16:19:10 -0400 (Sun, 12 Oct 2025)
EllapsedTime: 1035.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ASURAT
###
##############################################################################
##############################################################################


* checking for file ‘ASURAT/DESCRIPTION’ ... OK
* preparing ‘ASURAT’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ASURAT.Rmd’ using rmarkdown
2025-10-12 16:03:52.372 R[40555:518037484] XType: com.apple.fonts is not accessible.
2025-10-12 16:03:52.374 R[40555:518037484] XType: XTFontStaticRegistry is enabled.

  |                                                                            
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  |======================================================================| 100%

Quitting from ASURAT.Rmd:525-540 [unnamed-chunk-35]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Caught an unexpected error of class FutureLaunchError when trying to launch future ('future_lapply-1') on backend of class SequentialFutureBackend. The reason was: future::evalFuture() failed on lconway (pid 40555) at 2025-10-12T16:19:08. Using package 'future' v1.67.0. Possible other reasons: bad binding access
---
Backtrace:
     ▆
  1. ├─Seurat::FindNeighbors(surt, reduction = "pca", dims = ds[[i]])
  2. └─Seurat:::FindNeighbors.Seurat(surt, reduction = "pca", dims = ds[[i]])
  3.   ├─Seurat::FindNeighbors(...)
  4.   └─Seurat:::FindNeighbors.default(...)
  5.     └─Seurat:::NNHelper(...)
  6.       ├─base::do.call(what = "AnnoyNN", args = args)
  7.       └─Seurat:::AnnoyNN(...)
  8.         └─Seurat:::AnnoySearch(...)
  9.           └─future.apply::future_lapply(...)
 10.             └─future.apply:::future_xapply(...)
 11.               └─base::tryCatch(...)
 12.                 └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 13.                   └─base (local) tryCatchOne(...)
 14.                     └─value[[3L]](cond)
 15.                       └─future.apply:::onError(e, futures = fs, debug = debug)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ASURAT.Rmd' failed with diagnostics:
Caught an unexpected error of class FutureLaunchError when trying to launch future ('future_lapply-1') on backend of class SequentialFutureBackend. The reason was: future::evalFuture() failed on lconway (pid 40555) at 2025-10-12T16:19:08. Using package 'future' v1.67.0. Possible other reasons: bad binding access
--- failed re-building ‘ASURAT.Rmd’

SUMMARY: processing the following file failed:
  ‘ASURAT.Rmd’

Error: Vignette re-building failed.
Execution halted