Package: GSBenchMark

Version: 1.4.0

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:GSBenchMark.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings GSBenchMark_1.4.0.tar.gz

StartedAt: 2019-10-17 13:16:12 -0400 (Thu, 17 Oct 2019)

EndedAt: 2019-10-17 13:16:39 -0400 (Thu, 17 Oct 2019)

EllapsedTime: 27.5 seconds

RetCode: 0

Status:  OK

CheckDir: GSBenchMark.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:GSBenchMark.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings GSBenchMark_1.4.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.9-data-experiment/meat/GSBenchMark.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GSBenchMark/DESCRIPTION’ ... OK
* this is package ‘GSBenchMark’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GSBenchMark’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 41.9Mb
  sub-directories of 1Mb or more:
    data  41.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.9-data-experiment/meat/GSBenchMark.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL GSBenchMark
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘GSBenchMark’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GSBenchMark)

name	user	system	elapsed
GSBenchMarkDatasets	0.209	0.005	0.213
bipolar_GDS2190	0.204	0.004	0.209
breast_GDS807	0.206	0.004	0.210
diracpathways	0.021	0.008	0.029
exprsdata	0.315	0.004	0.318
leukemia_GSEA	0.195	0.008	0.202
logexprsdata	0.317	0.012	0.329
marfan_GDS2960	0.107	0.004	0.110
melanoma_GDS2735	0.255	0.008	0.264
parkinsons_GDS2519	0.43	0.04	0.47
phenotypes	0.316	0.008	0.324
prostate_GDS2545_m_nf	0.196	0.000	0.197
prostate_GDS2545_m_p	0.378	0.012	0.390
prostate_GDS2545_p_nf	0.302	0.019	0.322
sarcoma_data	0.526	0.056	0.582
squamous_GDS2520	0.201	0.004	0.205