Package: FANTOM3and4CAGE

Version: 1.20.0

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:FANTOM3and4CAGE.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings FANTOM3and4CAGE_1.20.0.tar.gz

StartedAt: 2019-10-17 13:08:21 -0400 (Thu, 17 Oct 2019)

EndedAt: 2019-10-17 13:09:20 -0400 (Thu, 17 Oct 2019)

EllapsedTime: 58.7 seconds

RetCode: 0

Status:  OK

CheckDir: FANTOM3and4CAGE.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:FANTOM3and4CAGE.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings FANTOM3and4CAGE_1.20.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.9-data-experiment/meat/FANTOM3and4CAGE.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘FANTOM3and4CAGE/DESCRIPTION’ ... OK
* this is package ‘FANTOM3and4CAGE’ version ‘1.20.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘FANTOM3and4CAGE’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 34.4Mb
  sub-directories of 1Mb or more:
    data  34.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
FANTOMtissueCAGEhuman 7.452  0.236   7.688
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.9-data-experiment/meat/FANTOM3and4CAGE.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL FANTOM3and4CAGE
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘FANTOM3and4CAGE’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FANTOM3and4CAGE)

name	user	system	elapsed
FANTOMhumanSamples	0.016	0.000	0.016
FANTOMmouseSamples	0.002	0.001	0.002
FANTOMtimecourseCAGEhuman	3.360	0.136	3.497
FANTOMtimecourseCAGEmouse	0.255	0.007	0.263
FANTOMtissueCAGEhuman	7.452	0.236	7.688
FANTOMtissueCAGEmouse	2.786	0.035	2.823